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    13 repositories

    • echidna

      Public
      Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • echidna_reproducibility

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • starfysh_reproducibility

      Public
      Jupyter Notebook
      •2•6•0•0•Updated Nov 26, 2024Nov 26, 2024

    • dli_reproducibility

      Public
      Notebooks to recreate paper figures
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • decipher_reproducibility

      Public
      Jupyter Notebook
      •2•3•0•0•Updated Nov 5, 2024Nov 5, 2024

    • DIISCO_public

      Public
      Publically accessible code for DIISCO method
      Jupyter Notebook
      •
      MIT License
      •1•9•4•1•Updated Oct 29, 2024Oct 29, 2024

    • decipher

      Public
      A single-cell analysis toolkit to jointly analyze samples from distinct conditions
      Python
      •0•22•1•0•Updated Sep 9, 2024Sep 9, 2024

    • starfysh

      Public
      Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •13•106•3•0•Updated Aug 21, 2024Aug 21, 2024

    • sdcd

      Public
      Stable Differentiable Causal Discovery (SDCD)
      Jupyter Notebook
      •
      MIT License
      •2•18•0•0•Updated Jun 17, 2024Jun 17, 2024

    • decipher_data

      Public
      Data (small) for decipher tutorials.
      MIT License
      •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • CEVVO

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 4, 2023Nov 4, 2023

    • LF_CP_JF_Final_NMF_Treg-Fibroblast

      Public
      final project of Cameron Park, Joy Fan, and Lauren Friend for the Fall 2020 BMEN 4480 course taught by Dr. Azizi
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • dli_gpr

      Public
      GP regression model for DLI therapy data for CML
      Jupyter Notebook
      •1•0•0•0•Updated Jun 3, 2020Jun 3, 2020