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    5 repositories

    • ppi_autoimmune

      Public
      Python
      •0•0•0•0•Updated Aug 25, 2024Aug 25, 2024

    • Global-and-taxonomic-ARG-prevelence

      Public
      Code for the manuscript "Clinically relevant antibiotic resistance genes are linked to a restricted set of taxa within gut microbiome worldwide"
      Jupyter Notebook
      •0•1•0•0•Updated Oct 22, 2023Oct 22, 2023

    • PRO-seq

      Public
      Scripts and R code used to process sequencing data and generate figures for E. coli & microbiome PRO-seq
      Shell
      •
      MIT License
      •0•1•0•0•Updated Oct 17, 2023Oct 17, 2023

    • GCN-HGT

      Public
      Prediction of horizontal gene transfer (HGT) using graph convolutional network
      Python
      •
      MIT License
      •4•10•1•0•Updated Apr 25, 2022Apr 25, 2022

    • Human-microbiome-PPI

      Public
      Host-microbiome protein-protein interactions capture disease-relevant pathways
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022