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    32 repositories

    • caMicroscope

      Public
      Digital pathology image viewer with support for human/machine generated annotations and markups.
      digital-pathologywhole-slide-imagingslide-imagescamicroscope
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •305•266•12•36•Updated Jan 13, 2025Jan 13, 2025

    • Distro

      Public
      Docker distribution of camicroscope and all its components
      PHP
      •
      BSD 3-Clause "New" or "Revised" License
      •152•30•9•4•Updated Jan 13, 2025Jan 13, 2025

    • dicomsrv

      Public
      caMicroscope DICOM server (Orthanc) build scripts
      Dockerfile
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • image-decoders

      Public
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Dec 21, 2024Dec 21, 2024

    • SlideLoader

      Public
      Tool for loading slide metadata for caMicroscope
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•3•3•0•Updated Nov 20, 2024Nov 20, 2024

    • camicroscope.github.io

      Public
      caMicroscope organization page
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •20•4•8•11•Updated Oct 13, 2024Oct 13, 2024

    • .github

      Public
      Repository for Community Support Documents
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•1•Updated Sep 27, 2024Sep 27, 2024

    • iipImage

      Public
      Containerized IIP
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •6•1•3•0•Updated Sep 4, 2024Sep 4, 2024

    • Caracal

      Public
      Conslidated Backend, Auth, and Security Services for caMicroscope
      JavaScript
      •
      GNU General Public License v3.0
      •99•15•17•8•Updated Aug 12, 2024Aug 12, 2024

    • orthanc-indexer

      Public
      Orthanc indexer plugin fork with caMicroscope patches
      C
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • 3dPrintedMicroscope

      Public
      Special code for using caMicroscope live with a 3d printed microscope
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • tfjs-models

      Public
      Sample Models for use with caMicroscope
      Jupyter Notebook
      •5•8•3•2•Updated Mar 31, 2024Mar 31, 2024

    • GSOC

      Public
      Self-Contained Project Ideas from caMicroscope (Ideal for GSoC or small grants)
      pythoncjavahtmljavascript
      18•83•1•1•Updated Mar 13, 2024Mar 13, 2024

    • docs

      Public
      Documentation for caMicroscope
      4•1•1•2•Updated Mar 13, 2024Mar 13, 2024

    • BFBridge

      Public
      Bioformats Bridge
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•0•Updated Nov 17, 2023Nov 17, 2023

    • eaglescope

      Public
      Hierarchical and Cohort Visualization
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •18•0•0•0•Updated Nov 17, 2023Nov 17, 2023

    • security-router-v2

      Public archive
      Security, user authentication and landing page for caMicroscope
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•7•Updated Dec 22, 2022Dec 22, 2022

    • rbac-admin

      Public
      rbac admin portal
      JavaScript
      •6•1•8•1•Updated Jan 10, 2022Jan 10, 2022

    • ImageLoader.py

      Public archive
      Python utility that also does image loading. Used for large scale image loading where images are already available and all that is needed is to extract and store the metadata.
      Python
      •4•1•0•0•Updated Nov 22, 2019Nov 22, 2019

    • Nanoborb

      Public archive
      Java
      •3•0•0•0•Updated Jul 5, 2019Jul 5, 2019

    • ViewerDockerContainer

      Public archive
      Dockerfile for caMicroscope viewer. Includes Apache, PHP, IIPSrv and caMicroscope.
      JavaScript
      •
      Apache License 2.0
      •8•1•0•0•Updated Feb 20, 2019Feb 20, 2019

    • DataDockerContainer

      Public archive
      Dockerfile for the Data layer of caMicroscope. Installs Mongo, Bindaas and mounts appropriate directories from the file system.
      JavaScript
      •6•0•1•1•Updated Oct 1, 2018Oct 1, 2018

    • DynamicServices

      Public archive
      C++
      •
      Apache License 2.0
      •4•0•1•0•Updated Jun 8, 2018Jun 8, 2018

    • oss-lite

      Public archive
      Python
      •
      Apache License 2.0
      •2•2•3•0•Updated Jun 8, 2018Jun 8, 2018

    • LoaderDockerContainer

      Public archive
      Dockerfile for loader docker container. Includes uAIMLoader and ImageLoader.
      Java
      •3•0•1•0•Updated Jun 5, 2018Jun 5, 2018

    • OrderingService

      Public archive
      Ordering service for camicroscope. Used by Dynamic Services etc.
      Shell
      •2•0•0•0•Updated May 15, 2018May 15, 2018

    • ImageLoader

      Public archive
      APIs for loading whole slide images onto caMicroscope.
      JavaScript
      •2•1•0•1•Updated Jan 30, 2018Jan 30, 2018

    • FlexTables

      Public archive
      Tabular browsing of hierarchical REST APIs
      JavaScript
      •
      MIT License
      •3•0•0•0•Updated Sep 21, 2017Sep 21, 2017

    • bindaas

      Public archive
      Dockerfile for bindaas
      Shell
      •1•0•1•0•Updated Aug 3, 2017Aug 3, 2017

    • uAIMDataLoader

      Public archive
      API for loading Markups for caMicroscope.
      JavaScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 2, 2017Aug 2, 2017