Skip to content

@evocellnet evocellnet

Change the repository type filter

All

    Repositories list

    16 repositories

    • phosphocontrol

      Public
      Studying the structural effects of protein phosphorylation
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • sysbio_teaching

      Public
      Repository for the ETHZ Systems Biology course (FS2023)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated May 15, 2024May 15, 2024

    • bc_deep_learning_in_biology

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Feb 27, 2024Feb 27, 2024

    • ecoref

      Public
      An Escherichia coli genetic reference panel
      0•0•0•0•Updated Nov 29, 2022Nov 29, 2022

    • kpred

      Public
      Uncovering phosphorylation–based specificities through functional interaction networks
      JavaScript
      •1•2•1•0•Updated Sep 27, 2022Sep 27, 2022

    • phosfate

      Public
      Phosfate - Understanding human quantitative phosphoproteomics
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•5•0•Updated May 7, 2021May 7, 2021

    • kinase-activity-net

      Public
      R
      •1•0•0•0•Updated Feb 21, 2020Feb 21, 2020

    • funscoR

      Public
      R package for functionally scoring phosphorylation sites
      R
      •6•19•1•0•Updated Nov 3, 2019Nov 3, 2019

    • evocellnet.github.io

      Public
      HTML
      •0•0•0•0•Updated Nov 3, 2019Nov 3, 2019

    • ptm_hotspots

      Public
      Estimate PTM hotspots in protein sequence alignments
      bioinformaticsphosphoproteomicsprotein-domains
      Python
      •
      Apache License 2.0
      •3•13•0•0•Updated Feb 6, 2019Feb 6, 2019

    • ptmAge

      Public
      Calculates the age of a PTM using ancestral reconstruction (from Romain Studer)
      Python
      •3•2•1•0•Updated Nov 26, 2018Nov 26, 2018

    • int3dInterfaces

      Public
      Pipeline to extract protein interfaces from Interactome3d structures
      bioinformaticsstructural-biologyppi
      Perl
      •4•7•0•0•Updated Oct 16, 2018Oct 16, 2018

    • mutfunc-webserver

      Public
      Bug tracker for the mutfunc webserver
      1•0•3•0•Updated Aug 24, 2018Aug 24, 2018

    • ptmdb

      Public
      This projects contains all the necessary code to create and fill the ptmdb database. This repository can act as a submodule of other projects intended to use the ptmdb
      Perl
      •
      MIT License
      •1•1•0•0•Updated May 9, 2018May 9, 2018

    • ksea

      Public
      Kinase Activity Predictions from shotgun proteomics
      bioinformaticsproteomicskinase-activity-predictions
      R
      •1•12•1•0•Updated Apr 18, 2017Apr 18, 2017

    • bacteria2tfbs

      Public
      Scripts and utilities to search TFBS in bacterial genomes
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 28, 2015Jan 28, 2015