Harvard Medical School - Department of Biomedical Informatics

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362 repositories

Access-to-Data-using-PIC-SURE-API
Public
Jupyter Notebook
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Apache License 2.0
•8•6•0•0•Updated Dec 17, 2024Dec 17, 2024
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
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Apache License 2.0
•0•1•0•7•Updated Dec 17, 2024Dec 17, 2024
pic-sure
Public
PIC-SURE API
Java
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Apache License 2.0
•3•5•0•6•Updated Dec 17, 2024Dec 17, 2024
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•2•Updated Dec 17, 2024Dec 17, 2024
pic-sure-auth-microapp
Public
Java
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Apache License 2.0
•5•4•0•1•Updated Dec 17, 2024Dec 17, 2024
pic-sure-all-in-one
Public
Shell
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Apache License 2.0
•12•4•0•2•Updated Dec 17, 2024Dec 17, 2024
pic-sure-wildfly-docker
Public
Dockerfile
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Apache License 2.0
•1•0•0•0•Updated Dec 17, 2024Dec 17, 2024
cellpop
Public
TypeScript
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MIT License
•1•0•11•2•Updated Dec 17, 2024Dec 17, 2024
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Dec 17, 2024Dec 17, 2024
i2b2v2-webclient
Public
JavaScript
•4•2•1•0•Updated Dec 17, 2024Dec 17, 2024
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
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MIT License
•18•129•17•11•Updated Dec 17, 2024Dec 17, 2024
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Dec 17, 2024Dec 17, 2024
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
HTML
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MIT License
•38•8•22•23•Updated Dec 16, 2024Dec 16, 2024
DBMI-LZA-Dev
Public
Deploy a multi-account cloud foundation to support highly-regulated workloads and complex compliance requirements.
TypeScript
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Apache License 2.0
•460•0•0•0•Updated Dec 16, 2024Dec 16, 2024
picsure-dictionary
Public
Java
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Apache License 2.0
•1•0•0•2•Updated Dec 16, 2024Dec 16, 2024
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Shell
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Apache License 2.0
•0•0•0•0•Updated Dec 16, 2024Dec 16, 2024
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
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Apache License 2.0
•2•2•0•0•Updated Dec 16, 2024Dec 16, 2024
hypatio-app
Public
Python
•0•4•0•8•Updated Dec 16, 2024Dec 16, 2024
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Dec 16, 2024Dec 16, 2024
fhirquestionnaire
Public
HTML
•0•2•0•4•Updated Dec 16, 2024Dec 16, 2024
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Dec 16, 2024Dec 16, 2024
actions
Public
0•0•0•37•Updated Dec 16, 2024Dec 16, 2024
picsure-dictionary-etl
Public
Java
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Apache License 2.0
•0•0•0•2•Updated Dec 15, 2024Dec 15, 2024
service-workbench-on-aws
Public
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
JavaScript
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Apache License 2.0
•118•7•0•2•Updated Dec 13, 2024Dec 13, 2024
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
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Apache License 2.0
•1•0•0•0•Updated Dec 12, 2024Dec 12, 2024
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
TypeScript
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MIT License
•7•66•32•2•Updated Dec 12, 2024Dec 12, 2024
pic-sure-public-datasets
Public
Public datasets available for PIC-SURE
Apache License 2.0
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024
pic-sure-hpds
Public
Java
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Apache License 2.0
•6•3•0•7•Updated Dec 9, 2024Dec 9, 2024
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•46•290•44•4•Updated Dec 9, 2024Dec 9, 2024
Access-to-Data-and-Compute-using-Service-Workbench
Public
Repository for Service Workbench example notebooks
Jupyter Notebook
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Apache License 2.0
•2•0•0•0•Updated Dec 4, 2024Dec 4, 2024