kirkegaardlab

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8 repositories

gradnodes
Public
Official code implementation of the paper on adaptive node position in biological transport networks
biological-simulations jax transport-networks differentiable-physics
Python
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MIT License
•0•2•0•0•Updated Nov 1, 2024Nov 1, 2024
full-scale-leaves
Public
Python
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MIT License
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
recloc
Public
Code for the project on cell surface receptors location optimized for gradient sensing
information-theory decision-making automatic-differentiation biophysics sensing
Python
•0•2•0•0•Updated Oct 7, 2024Oct 7, 2024
deeptangle
Public
Code implementation of the detection network capable of dealing with many overlapping spline bodies.
computer-vision deep-learning splines c-elegans latent-space quantitative-biology single-stage-detector
Python
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MIT License
•2•36•0•0•Updated Aug 30, 2024Aug 30, 2024
chemoxrl
Public
Code implementation for the paper about integration of temporal and spatial information in chemotaxis using reinforcement learning
reinforcement-learning recurrent-neural-networks chemotaxis jax
Python
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MIT License
•0•4•0•0•Updated Oct 18, 2023Oct 18, 2023
diffusionsplit
Public
Python
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MIT License
•0•0•0•0•Updated Jul 7, 2023Jul 7, 2023
cellpose-overlap
Public
Python
•0•0•0•0•Updated Jun 7, 2023Jun 7, 2023
deeptanglelabel
Public
HTML
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MIT License
•0•2•0•0•Updated Feb 6, 2023Feb 6, 2023