Repositories list

• massSight

  Public
  An R package for the alignment and scaling of LC-MS metabolomics data

  rmetabolomicsomics+ 1batch-correction

  R

  •

  MIT License

  •0•2•2•0•Updated Dec 5, 2024Dec 5, 2024

• waveome

  Public
  This is a repository that contains a python package for automated longitudinal data analysis using Gaussian processes.

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• PREMIER

  Public
  Analysis for plasma branched-chain amino acid levels and cardiovascular disease risk factors: a longitudinal analysis of a lifestyle trial

  R

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• cellSight

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• covid-19

  Public
  Scripts, data, and analysis of COVID-19

  R

  •0•2•0•0•Updated Nov 8, 2024Nov 8, 2024

• omePath

  Public
  omePath: Omics Pathway Enrichment Analysis

  R

  •

  Other

  •4•2•1•0•Updated Nov 6, 2024Nov 6, 2024

• massSightCafe

  Public
  R

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• omicsArt

  Public
  statistical analysis and visualization for omics data

  R

  •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

• pubSight

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• deepbreaks

  Public
  deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.

  machine-learningpredictionsequencing-data+ 1phenotype-genotype-information

  Jupyter Notebook

  •3•9•0•0•Updated Aug 15, 2024Aug 15, 2024

• btest

  Public
  btest: link, rank, and visualize associations among omics features across multi-omics datasets

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jul 19, 2024Jul 19, 2024

• omeClust

  Public
  multi-resolution clustering of omics data

  Python

  •

  MIT License

  •5•14•0•1•Updated Jun 18, 2024Jun 18, 2024

• rahlab-forum

  Public
  0•0•0•0•Updated May 10, 2024May 10, 2024

• seqSight

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Apr 10, 2024Apr 10, 2024

• PUBH6859

  Public
  Jupyter Notebook

  •

  MIT License

  •5•1•0•2•Updated Mar 28, 2024Mar 28, 2024

• breastmilk-stool-omics

  Public
  R

  •0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

• NF1-MEKi

  Public
  This repository includes a set of analyses and visualization for project entitled "The Impact of MEK-inhibitors on Neurofibromatosis Type I Associated Metabolism".

  R

  •

  MIT License

  •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• hackensack_analysis

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• Tweedieverse

  Public
  0•1•0•0•Updated Aug 8, 2023Aug 8, 2023

• Workshop

  Public
  omicsEye workshops

  R

  •

  MIT License

  •0•3•0•0•Updated Aug 8, 2023Aug 8, 2023

• rare_disease_claims

  Public
  rare_disease

  R

  •

  MIT License

  •1•0•0•0•Updated Apr 6, 2023Apr 6, 2023

• strainFocus

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 21, 2022Jul 21, 2022

• COVID_Test_Time

  Public
  Modeling an dPredicting the efficient frequency of COVID-19 testing

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 4, 2022Feb 4, 2022

• Coxome

  Public
  MIT License

  •0•0•0•0•Updated Sep 27, 2021Sep 27, 2021

• microbial_physiology

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jul 22, 2021Jul 22, 2021

• BenchClust

  Public
  R

  •0•0•0•0•Updated Mar 23, 2021Mar 23, 2021