Repositories list

• redeem_reproducibility

  Public
  Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

  Jupyter Notebook

  •1•3•0•0•Updated Jan 22, 2024Jan 22, 2024

• redeemR

  Public
  R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

  Jupyter Notebook

  •

  MIT License

  •5•6•0•0•Updated Jan 22, 2024Jan 22, 2024

• redeemV

  Public
  Jupyter Notebook

  •3•3•0•0•Updated Jan 22, 2024Jan 22, 2024

• SCAVENGE

  Public
  SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

  network-propagationrandom-walkcomplex-traits+ 11single-cell-analysisfine-mappingscatac-seqdisease-mechanismscell-heterogeneitycell-statecell-trajectory+ 4

  R

  •

  GNU General Public License v3.0

  •34•80•6•1•Updated Sep 1, 2023Sep 1, 2023

• hematopoiesis_be_screens

  Public
  Repo for scripts for Martin-Rufino et al. hematopoiesis base editor screens

  0•1•0•0•Updated Aug 14, 2023Aug 14, 2023

• mecom_var

  Public
  HTML

  •27•25•0•0•Updated Jan 23, 2023Jan 23, 2023

• SCAVENGE-reproducibility

  Public
  Repository for processed data and scripts for Yu et al. SCAVENGE paper bioRxiv

  R

  •

  GNU General Public License v2.0

  •1•4•0•0•Updated Jun 8, 2022Jun 8, 2022

• scd-chip

  Public
  Information accompanying Liggett et al. 2021

  MIT License

  •0•1•0•0•Updated Jan 24, 2022Jan 24, 2022

• Fetal_Hemoglobin_model

  Public
  R

  •0•0•0•0•Updated Feb 1, 2021Feb 1, 2021

• mpn-gwas

  Public
  Analysis repository for MPN GWAS manuscript

  R

  •3•4•0•0•Updated Oct 14, 2020Oct 14, 2020

• erythroid-profiling

  Public
  Analysis repository for Erythropoiesis ATAC/RNA profiling paper

  rna-seqepigeneticsatac-seq+ 1erythropoesis

  HTML

  •3•3•0•0•Updated Feb 10, 2020Feb 10, 2020

• mito-genotyping

  Public
  Repo for scripts for Ludwig et al mtDNA genotyping

  R

  •11•16•0•0•Updated Nov 22, 2019Nov 22, 2019

• translation-regulation-bcl11a

  Public
  Repository for analyses related to BCL11A translational control

  R

  •0•1•0•0•Updated Oct 7, 2019Oct 7, 2019

• shRNA_screen

  Public
  Code and data repository for analysis of RBC shRNA screen

  Jupyter Notebook

  •1•0•0•0•Updated Apr 8, 2019Apr 8, 2019

• singlecell_bloodtraits

  Public
  Data/analysis repository for "Interrogation of human hematopoiesis..." paper

  R

  •10•1•0•0•Updated Oct 28, 2018Oct 28, 2018