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    10 repositories

    • fishpond

      Public
      Differential expression and allelic analysis, nonparametric statistics
      statisticsgenomicsgene-expressionbioconductorrnaseqtranscriptomicssalmonscrnaseq
      R
      •10•28•1•0•Updated Jan 3, 2025Jan 3, 2025

    • .github

      Public
      0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

    • DESeq2

      Public
      Differential expression of RNA-seq data using the Negative Binomial
      R
      •89•366•2•0•Updated Nov 14, 2024Nov 14, 2024

    • tximeta

      Public
      Transcript quantification import with automatic metadata detection
      R
      •11•67•11•0•Updated Oct 18, 2024Oct 18, 2024

    • rust4bio-piedmont

      Public
      A space to collect code and docs related to Rust for Bioinformatics
      0•4•0•0•Updated Apr 13, 2024Apr 13, 2024

    • tximport

      Public
      Transcript quantification import for modular pipelines
      bioconductorrnaseqdeseq2
      R
      •34•136•1•0•Updated Mar 23, 2024Mar 23, 2024

    • rnaseqGene

      Public
      RNA-seq workflow: exploratory analysis and differential expression
      TeX
      •39•73•0•0•Updated Nov 14, 2023Nov 14, 2023

    • rnaseqDTU

      Public
      RNA-seq workflow: differential transcript usage
      TeX
      •11•20•0•0•Updated Aug 20, 2023Aug 20, 2023

    • mrlocus

      Public
      Mendelian Randomization of gene expression (exposure) on GWAS traits (outcome). See website for software usage guide:
      R
      •8•1•1•0•Updated Aug 16, 2023Aug 16, 2023

    • comp-bio-setup

      Public
      Set up a computer for Computational Biology
      bioinformaticsrhowtoguidecompbio
      Python
      •3•5•0•0•Updated Oct 4, 2022Oct 4, 2022