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    35 repositories

    • wrstat

      Public
      A more reliable and efficient replacement for mpistat using wr.
      Go
      •
      MIT License
      •2•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • benchmarking

      Public
      A benchmarking suite for Sanger's Genomics Workloads
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • wr

      Public
      experimental reimplementation of wr using TDD
      Go
      •
      MIT License
      •1•2•0•4•Updated Jul 3, 2024Jul 3, 2024

    • snakemake-lsf

      Public
      Sanger snakemake profile for running jobs on an LSF cluster
      Python
      •
      MIT License
      •22•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • lsf-log-watch

      Public
      LSF log watching via AMQP
      Python
      •
      GNU General Public License v3.0
      •2•2•3•1•Updated Mar 13, 2024Mar 13, 2024

    • lsf-criu-integration

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 28, 2023Jul 28, 2023

    • osdataproc

      Public
      osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
      Jinja
      •
      Other
      •3•2•0•1•Updated Jan 24, 2023Jan 24, 2023

    • simple-image-builder

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • wtsi-ssg-lustre-jobstats

      Public
      Python
      •1•0•0•0•Updated Nov 28, 2022Nov 28, 2022

    • Docker-create

      Public
      Dockerfiles and configuration components for HPC Singularity and cloud use
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 2, 2022Oct 2, 2022

    • iseqfile

      Public
      Drop-in replacement for a Sanger-specific imeta query for getting iRODS seq paths, to get the result fast.
      Go
      •
      MIT License
      •0•0•0•0•Updated Oct 6, 2021Oct 6, 2021

    • ceph-disk-utils

      Public
      Shell utilities for managing disks within ceph clusters
      utilitiescephdisk-usagesupermicro
      Shell
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 4, 2021Jun 4, 2021

    • mpistat

      Public
      Efficiently lstat every file in a filesystem tree in parallel across multiple nodes using MPI.
      Python
      •4•1•0•0•Updated May 17, 2021May 17, 2021

    • secure-lustre

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 7, 2021May 7, 2021

    • mpirunp

      Public
      Transparent wrapper for openmpi mpirun that finds good ports to use
      Go
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2021Mar 26, 2021

    • irods_migrate

      Public
      tooling for bulk migration of data in iRODS using parallel iphymv
      Shell
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 5, 2021Feb 5, 2021

    • irods-mermaid-trees

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 21, 2020Dec 21, 2020

    • conda_samtools_development

      Public
      This repository is to build samtools package from it's development branch using conda.
      Shell
      •
      Other
      •1•0•0•0•Updated Jun 19, 2020Jun 19, 2020

    • mistral_benchmarking_cromwell_nextflow

      Public
      WDL
      •
      Other
      •1•1•0•0•Updated Dec 24, 2019Dec 24, 2019

    • sv-pipeline

      Public
      Other
      •0•0•0•0•Updated Dec 9, 2019Dec 9, 2019

    • cromwell_wr_openstack

      Public
      WDL
      •
      Other
      •0•0•0•0•Updated Dec 5, 2019Dec 5, 2019

    • letsencrypt-rgw

      Public
      LetsEncrypt Support for the Ceph RADOS gateway
      letsencryptcephletsencrypt-utilsceph-radosgw
      Shell
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Sep 20, 2018Sep 20, 2018

    • duplicity-backup.sh

      Public
      Bash wrapper script for automated backups with duplicity supporting Amazon's S3 online storage as well as other storage destinations (ftp, rsync, sftp, local storage...).
      Shell
      •
      GNU General Public License v3.0
      •238•0•0•0•Updated Aug 4, 2018Aug 4, 2018

    • pcp

      Public
      Parallel copy tool
      Python
      •
      GNU General Public License v2.0
      •10•32•10•2•Updated Apr 2, 2018Apr 2, 2018

    • pwalk

      Public
      Parallel filesystem walking utilities and library.
      Python
      •
      GNU General Public License v2.0
      •5•6•0•0•Updated Oct 31, 2017Oct 31, 2017

    • autoscale-etcd

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 19, 2017Sep 19, 2017

    • image-creation-ci

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 25, 2016Nov 25, 2016

    • image-creation

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Sep 14, 2016Sep 14, 2016

    • os-cluster-internal-config

      Public
      Shell
      •0•0•0•0•Updated Jun 2, 2016Jun 2, 2016

    • os-cluster

      Public
      Shell
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Apr 11, 2016Apr 11, 2016