Zaritsky Lab

All

14 repositories

shape-exp-modeling
Public
Jupyter Notebook
•0•0•0•0•Updated Dec 16, 2024Dec 16, 2024
CELTIC
Public
CEll in silico Labeling using Tabular Input Context
image-to-image-translation in-silico-labeling label-free-microscopy organelle-fluorescence-prediction cell-context-integration celtic-model out-of-distribution-data intracellular-organization deep-learning-in-cell-biology foundation-models-for-biology
1•0•0•0•Updated Dec 4, 2024Dec 4, 2024
nanoneedle-biopsy
Public
Nanoneedles Enable Spatiotemporal Lipidomics of Living Tissues
visualization processing machine-learning statistics deep-learning cancer-research mass-spectrometry-imaging glioma
Python
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GNU General Public License v3.0
•1•1•0•0•Updated Dec 1, 2024Dec 1, 2024
recurring-transient-communities
Public
Detection of transient communities and hotspots in the developing Drosophila lymph gland, using ARCOS framework on Ca2+ readouts
Python
•0•1•0•0•Updated Nov 2, 2024Nov 2, 2024
.github
Public
✨special ✨ repository that you can use to add README.md to your public organization profile, visible to anyone.
GNU General Public License v3.0
•0•0•0•0•Updated Oct 28, 2024Oct 28, 2024
Intracellular_Information_Processing
Public
Spatiotemporal analysis of F-actin polymerization with micropillar arrays reveals synchronization between adhesion sites
Python
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GNU General Public License v3.0
•2•1•0•0•Updated Oct 28, 2024Oct 28, 2024
IRM-Spreading-Dynamics
Public
A custom pipeline for quantifying the spatiotemporal dynamics of platelet spreading process under IRM microscopy.
dynamics microscopy irm timelapse spatio-temporal-analysis
Python
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GNU Lesser General Public License v3.0
•0•1•0•2•Updated Aug 30, 2024Aug 30, 2024
DISCOVER
Public
Visual interpretability of image-based classification models by generative latent space disentanglement
Jupyter Notebook
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MIT License
•0•11•1•0•Updated Jul 4, 2024Jul 4, 2024
AnomalyDetectionScreening
Public
Framework for hit identification in High Throughput Screening (HTS)
Jupyter Notebook
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MIT License
•1•0•0•0•Updated May 30, 2024May 30, 2024
muscle-formation-prediction
Public
Machine learning inference of continuous single-cell state transitions during myoblast differentiation and fusion
Jupyter Notebook
•1•1•0•0•Updated Dec 27, 2023Dec 27, 2023
multiplexed-imaging-motifs-visualiser
Public
Motif Visualizer for Multiplexed Imaging
Python
•1•1•0•0•Updated Dec 3, 2023Dec 3, 2023
MyocytesFusionSimulationsGeneratorAnalyzer
Public
OOP implementations of fusion policies, and simulations analysis compared to experimental data
bootstrap synchronization simulation oop fusion experimental-data
Python
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GNU General Public License v3.0
•0•1•0•2•Updated Oct 3, 2023Oct 3, 2023
SpatiotemproalQuantificationMonolayerCellMigrationPipeline
Public
A Matlab pipeline for spatiotemporal quantification of monolayer cell migration. The repository includes Matlab source code. This repository is part of the book series "Neubias Bioimage Analysis". The analysis pipeline includes segmentation, velocity measurements, kymographs and multi-dimensional representations and PCA of wound healing assays.
pca segmentation spatio-temporal-analysis cell-migration multidimensional-data bioimage-analysis kymography velocity-measurement
MATLAB
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GNU General Public License v3.0
•0•1•0•0•Updated Mar 14, 2021Mar 14, 2021
PropagationOfCellDeath
Public
Ferroptosis occurs through an osmotic mechanism and propagates independently of cell rupture
propagation rupture cell-death ferroptosis
Python
•2•1•0•0•Updated Apr 30, 2020Apr 30, 2020