What's Changed
- BUG initialize
beta_initwhen the design matrix is not full rank by @BorisMuzellec in #281 - MAINT Replace np.NaN with np.nan -> numpy 2.0 compat by @Zethson in #282
- BUG enable vst be used "blindly" and to fit its own dispersion by @laudmt in #268
- CHORE update code owners by @mandreux-owkin in #289
- MAINT summary function uses quiet to print by @yihming in #286
- ENH Poscount implementation & diag(XXT) optimization by @asistradition in #284
- BUG Inference n_cpus overwritten issue by @yihming in #293
- DOC specify what happens if n_cpus and inference are set by @umarteauowkin in #294
- DOC fix text format in DeseqStats docstring by @BorisMuzellec in #297
- ENH Remove count DataFrame from calculate_cooks by @asistradition in #292
- MAINT cast counts to int when initialising a DeseqDataSet from anndata by @BorisMuzellec in #299
New Contributors
- @Zethson made their first contribution in #282
- @laudmt made their first contribution in #268
- @yihming made their first contribution in #286
- @asistradition made their first contribution in #284
- @umarteauowkin made their first contribution in #294
Full Changelog: v0.4.9...v0.4.10
Contributors
yihming, BorisMuzellec, and 5 other contributors