v1.1.0: Merge pull request #22 from pbradleylab/dev

1. Added in DESeq graphing automatically
2. Generated new documentation
3. Added need for new input files for DESeq

Initial Release

Release without DESeq2 integerations.

What's Changed

• Fix read inputs by @Kekananen in #1
• removed file paths in output by @Kekananen in #2
• Dev by @Kekananen in #3
• Patches 1 by @Kekananen in #4
• fixed test samples by @Kekananen in #5
• Update License by @Kekananen in #7

New Contributors

• @Kekananen made their first contribution in #1

Full Changelog: https://github.com/pbradleylab/rnaseq-quantification-pipeline/commits/v1.0.0