Merge pull request #340 from pbs-assess/fix-delta-gamma-binomial-link #583
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: [main, dev, fmesher2] | |
| pull_request: | |
| branches: [main, dev] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| # - {os: ubuntu-latest, r: 'release'} | |
| # - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("sf") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_cran("textshaping") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Install dependencies Ubuntu | |
| if: runner.os == 'Linux' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("knitr") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Install dependencies Windows | |
| if: runner.os == 'Windows' | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("knitr") | |
| remotes::install_cran("rmarkdown") | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_github("pbs-assess/sdmTMBextra") | |
| install.packages("Matrix", type = "source") | |
| install.packages("TMB", type = "source") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes", "--no-build-vignettes"), build_args = c("--no-manual", "--no-build-vignettes"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |