fix illumina.nf

peterk87 · Jul 7, 2023 · 00f0409 · 00f0409
1 parent 7371191
commit 00f0409
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/illumina.nf b/workflows/illumina.nf
@@ -85,7 +85,7 @@ workflow ILLUMINA {
  ch_versions = ch_versions.mix(BLAST_BLASTN.out.versions)
 
  ch_blast = BLAST_BLASTN.out.txt.collect({ it[1] })
- SUBTYPING_REPORT(ZSTD_DECOMPRESS_CSV.out, ch_blast)
+ SUBTYPING_REPORT(ZSTD_DECOMPRESS_CSV.out.file, ch_blast)
  ch_versions = ch_versions.mix(SUBTYPING_REPORT.out.versions)
 
  SOFTWARE_VERSIONS(ch_versions.unique().collectFile(name: 'collated_versions.yml'))