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Add mqc_versions_table v0.2.0 binary and update CHANGELOG.md
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peterk87 committed Aug 7, 2024
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5 changes: 5 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -8,6 +8,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
This patch release fixes an issue (#75) with CAT_ILLUMINA_FASTQ where `1:N:0:.` or `2:N:0:.` may be mistakenly appended
to Q-score lines beginning with `@`.

### Changes

* fix: updated Perl regex to better match Illumina FASTQ header lines starting with `@`. At least one space ` ` is expected in the header line. Match regex has been changed to `/^@.* .*/` from `/^@.*/` so hopefully Q-score lines should not be matched anymore.
* dev: replaced nf-core/modules DUMPSOFTWAREVERSIONS with [mqc_versions_table v0.2.0](https://github.com/CFIA-NCFAD/nim-mqc-versions-yml/releases/tag/0.2.0) Nim statically compiled binary to parse `versions.yml` and output necessary YAML with HTML content for display of process and tool versions table in MultiQC report. In theory DUMPSOFTWAREVERSIONS should be using the same Docker/Singularity image/Conda env as the MultiQC process, but DUMPSOFTWAREVERSIONS uses an older version of MultiQC and only uses it for the pyyaml library. `mqc_versions_table` was developed to handle this instead with a small 200KB binary instead.

## [[3.4.0](https://github.com/CFIA-NCFAD/nf-flu/releases/tag/3.4.0)] - 2024-07-24

This release adds Influenza virus sequence annotation using VADR.
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