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@@ -12,6 +12,8 @@ This release fixes issues with subtype report generation script (`parse_influenz
* subtype prediction based off majority H/N prediction of all BLAST hits instead of just the top X matches (#40)
* the top hit for H/N can also be a user-specified sequence without subtype information
* top segment matches are now sorted by sample name, segment name and BLAST bitscore
* output concatenated Nanopore FASTQ to `${outdir}/fastq` by default (#43)
* Handle ambiguous bases in reference sequences by having Clair3 not convert those positions to N and Bcftools produce a warning instead of an error (#42)