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@pfenninglab

Pfenning Lab

Genetic and Epigenetic data processing code from the Pfenning Lab at Carnegie Mellon University

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  1. halLiftover-postprocessing halLiftover-postprocessing Public

    Python 18 4

  2. TACIT TACIT Public

    OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit

    Shell 16 2

  3. OCROrthologPrediction OCROrthologPrediction Public

    This repository contains models and code for predicting open chromatin status of OCR orthologs.

    Shell 3

  4. addiction_gwas_enrichment addiction_gwas_enrichment Public

    Scripts and data generated for the addiction GWAS enrichment and subsequent analyses.

    HTML 2 1

  5. ml-prototypes ml-prototypes Public

    Jupyter Notebook 1

  6. nhp_snrna_striatum_analysis nhp_snrna_striatum_analysis Public

    The code and notebook to go along with the Medium Spiny Neuron Diversity in the Primate Nucleus Accumbens publication

    Jupyter Notebook 1 1

Repositories

Showing 10 of 21 repositories
  • custom_ArchR_genomes_and_annotations Public

    R objects that contain custom ArchR genome annotations

    pfenninglab/custom_ArchR_genomes_and_annotations’s past year of commit activity
    Shell 1 GPL-3.0 0 1 0 Updated Sep 24, 2024
  • TACIT Public

    OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit

    pfenninglab/TACIT’s past year of commit activity
    Shell 16 2 0 0 Updated Sep 19, 2024
  • dorsalhorn_conserved_rna_atac_xen Public
    pfenninglab/dorsalhorn_conserved_rna_atac_xen’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 16, 2024
  • StriatumComparativeGenomics Public

    Comparative integrative analyses of single cell datasets of the mammalian striatum

    pfenninglab/StriatumComparativeGenomics’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Aug 14, 2024
  • OCROrthologPrediction Public

    This repository contains models and code for predicting open chromatin status of OCR orthologs.

    pfenninglab/OCROrthologPrediction’s past year of commit activity
    Shell 3 0 1 0 Updated Jul 3, 2024
  • sysMPRA Public

    This repository is for sysMPRA code.

    pfenninglab/sysMPRA’s past year of commit activity
    Python 0 0 0 0 Updated Mar 22, 2024
  • ml-prototypes Public
    pfenninglab/ml-prototypes’s past year of commit activity
    Jupyter Notebook 1 0 5 0 Updated Mar 2, 2024
  • ad_variants Public
    pfenninglab/ad_variants’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 2, 2024
  • RERconvergeVocalLearning Public
    pfenninglab/RERconvergeVocalLearning’s past year of commit activity
    R 1 0 0 0 Updated Feb 9, 2024
  • McLean_chronic_opioid_monkey_snRNA-seq Public

    inDrops v3 of N=8 rhesus macaque with and without chronic opioid use

    pfenninglab/McLean_chronic_opioid_monkey_snRNA-seq’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 26, 2023
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