install procps to be expected by Nextflow

pgdurand · Apr 22, 2024 · c1f4bc5 · c1f4bc5
1 parent 3270f96
commit c1f4bc5
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/singularity/Singularity b/singularity/Singularity
@@ -9,7 +9,7 @@ Bootstrap : docker
 From: debian:11-slim
 
 %post
-	BDM_VERSION=5.0.0
+	BDM_VERSION=5.0.1
 	BDMT_VERSION=2.1.2
 
 	# software-properties-common required to install Java Runtime
@@ -18,8 +18,9 @@ From: debian:11-slim
 	#    in BeeDeeM and BeeDeeM-Tools.
 	# bash is required when running this image by Nextflow pipelines.
 	# wget is required to install some banks (e.g. GeneOntology).
+	# procps (ps command) is required by Nextflow. 
 	apt-get -y update
-	apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip
+	apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip procps
 
 	# Java
 	# See https://www.oracle.com/java/technologies/downloads/#java17

diff --git a/singularity/Singularity.local b/singularity/Singularity.local
@@ -29,8 +29,9 @@ From: debian:11-slim
 	#    in BeeDeeM and BeeDeeM-Tools.
 	# bash is required when running this image by Nextflow pipelines.
 	# wget is required to install some banks (e.g. GeneOntology).
+	# procps (ps command) is required by Nextflow. 
 	apt-get -y update
-	apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip
+	apt-get -y install gawk openssh-client software-properties-common bzip2 libidn11 bash wget libxext6 libxrender1 libxtst6 libxi6 unzip procps
 
 	# Java
 	# See https://www.oracle.com/java/technologies/downloads/#java17