-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
fix opening files using drap and drop
- Loading branch information
Showing
3 changed files
with
116 additions
and
127 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,107 @@ | ||
| /* Copyright (C) 2003-2021 Patrick G. Durand | ||
| * | ||
| * This program is free software: you can redistribute it and/or modify | ||
| * it under the terms of the GNU Affero General Public License as published by | ||
| * the Free Software Foundation, either version 3 of the License, or | ||
| * (at your option) any later version. | ||
| * | ||
| * You may obtain a copy of the License at | ||
| * | ||
| * https://www.gnu.org/licenses/agpl-3.0.txt | ||
| * | ||
| * This program is distributed in the hope that it will be useful, | ||
| * but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| * GNU Affero General Public License for more details. | ||
| */ | ||
| package bzh.plealog.blastviewer.util; | ||
|
|
||
| import java.io.File; | ||
| import java.util.Enumeration; | ||
|
|
||
| import javax.swing.JComponent; | ||
|
|
||
| import com.plealog.genericapp.api.EZEnvironment; | ||
| import com.plealog.genericapp.api.log.EZLogger; | ||
|
|
||
| import bzh.plealog.bioinfo.api.data.searchresult.SRIteration; | ||
| import bzh.plealog.bioinfo.api.data.searchresult.SROutput; | ||
| import bzh.plealog.blastviewer.resources.BVMessages; | ||
|
|
||
| /** | ||
| * Utility class to open BLAST and PLAST data files. | ||
| * | ||
| * @author Patrick G. Durand | ||
| */ | ||
| public class FileLoadRunner extends Thread { | ||
| private File[] fs; | ||
|
|
||
| public FileLoadRunner(File[] fs) { | ||
| this.fs = fs; | ||
| } | ||
| private void doAction() { | ||
| EZEnvironment.setWaitCursor(); | ||
|
|
||
| EZLogger.info(BVMessages | ||
| .getString("OpenFileAction.msg1")); | ||
| SROutput sro, sroMaster=null; | ||
| int notLoadedFiles=0, ncount=0; | ||
| for (File f:fs) { | ||
| ncount++; | ||
| BlastViewerOpener.setHelperMessage(BVMessages | ||
| .getString("OpenFileAction.msg1")+ncount+"/"+fs.length); | ||
| sro = BlastViewerOpener.readBlastFile(f); | ||
| if (sro==null) { | ||
| notLoadedFiles++; | ||
| EZLogger.warn( | ||
| BVMessages.getString("OpenFileAction.err") + | ||
| f.getAbsolutePath()); | ||
| continue; | ||
| } | ||
| if (sroMaster == null) { | ||
| sroMaster = sro; | ||
| } | ||
| else { | ||
| Enumeration<SRIteration> sriEnum = sro.enumerateIteration(); | ||
| while(sriEnum.hasMoreElements()) { | ||
| sroMaster.addIteration(sriEnum.nextElement()); | ||
| } | ||
| } | ||
| } | ||
|
|
||
| EZLogger.info(String.format( | ||
| BVMessages.getString("OpenFileAction.msg4"), fs.length)); | ||
|
|
||
| if (sroMaster!=null) { | ||
| if(notLoadedFiles!=0) { | ||
| EZEnvironment.displayInfoMessage(EZEnvironment.getParentFrame(), | ||
| BVMessages.getString("OpenFileAction.msg2") ); | ||
| } | ||
| BlastViewerOpener.setHelperMessage(BVMessages | ||
| .getString("FetchFromNcbiAction.msg4")); | ||
|
|
||
| JComponent viewer = BlastViewerOpener.prepareViewer(sroMaster); | ||
|
|
||
| BlastViewerOpener.displayInternalFrame(viewer, fs[0].getName(), null); | ||
| EZLogger.info(BVMessages.getString("OpenFileAction.msg5")); | ||
| } | ||
| else { | ||
| EZEnvironment.displayInfoMessage(EZEnvironment.getParentFrame(), | ||
| BVMessages.getString("OpenFileAction.msg3") ); | ||
| } | ||
|
|
||
| System.gc(); | ||
| } | ||
| public void run() { | ||
| try { | ||
| doAction(); | ||
| } catch (Throwable t) { | ||
| EZLogger.warn( | ||
| BVMessages.getString("OpenFileAction.err") + | ||
| t.toString()); | ||
| } finally { | ||
| BlastViewerOpener.cleanHelperMessage(); | ||
| EZEnvironment.setDefaultCursor(); | ||
| } | ||
| } | ||
| } |