Patch release

Fix issues with Blast2 results having missing values

Official release of IPRscan BlastViewer

Features:

• same as 5.5.0 pre-release
• fixes:
  • fix closing application for macOS
  • fix opening files using drap and drop
  • enable to display Query Description column in summary table

User manual: integrate BLAST results and InterproScan predictions into BlastViewer.

Add Interproscan predictions import/management

• BlastViewer is now capable of importing and displaying Interproscan predictions.
• IPRscan XML and GFF3 files are accepted from release 5.28-67.0
• Enhance BlastViewer native file format using most recent binary XStream framework.

switch to jGAF 2.4.0

jGAF 2.4.0 enables BlastViewer to be fully compatible with JRE 8, 9 and above.

See jGAF library for more information.

Add command-line arguments to enable BLAST results opening at startup

This release implements request from issue #3 .

Simply run the following command to review command-line options of BlastViewer:

java -jar blastviewer-5.4.0.jar -h

Arguments enable to open BLAST results from either files, URLs or NCBI Blast server (using job RIDs):

java -jar blastviewer-5.4.0.jar -url "http://www.plealog.com/bv/blastp.xml"
java -jar blastviewer-5.4.0.jar -nrid HK740VV9016 
java -jar blastviewer-5.4.0.jar -in "../data/blastp.xml"

Read BlastViewer Wiki documentation for more information on this new feature.

Introduce multi-query viewer

This updated version of BlastViewer introduces the multi-query viewer aims at providing a single viewer to quickly review a BLAST file containing results for multiple queries.

The multi-query viewer also provides a quick way of reviewing classification data if any is available in the BLAST file ; requires to use Annotate tool availbale from BeeDeeM software. Simply try the BlastViewer with this file: data/blastp-71queries-swissprot-bco.zml.

Have a look at the Wiki of this project to review how to start and use the software.

Display annotated BLAST

This new release is aware of the "annotate BLAST results" available in BeeDeeM software.

You can try BlastViewer with the attached '1433S_HUMAN.zml' file: this is a BLAST file containing hits annotated with Human Swissprot data.

Have a look at the Wiki of this project to review how to start and use the software.

New viewers and tools

Introducing:

• Multiple Sequence Alignment Viewer
• Phylogenetic Tree Viewer
• data filtering using integrated BLAST Filter Tool

To use BlastViewer on either Linux, Mac OSX or Windows, download the "JAR" file, below.

Then have a look at the Wiki of this project to review how to start and use the software.

First release

To use BlastViewer on either Linux, Mac OSX or Windows, download the "JAR" file, below.

Then have a look at the Wiki of this project to review how to start and use the software.