Merge pull request #325 from pharmaR/324_riskmetric_0.2.4

Updates with CRAN fixes

DESCRIPTION

@@ -3,7 +3,7 @@ Type: Package
 Title: Risk Metrics to Evaluating R Packages
 Description: Facilities for assessing R packages against a number of metrics to 
  help quantify their robustness.
-Version: 0.2.3
+Version: 0.2.4
 Authors@R: c(
  person("R Validation Hub", role = c("aut"), email = "psi.aims.r.validation@gmail.com"),
  person("Doug", "Kelkhoff", role = c("aut"), email = "doug.kelkhoff@gmail.com"),

NEWS.md

@@ -1,3 +1,7 @@
+# riskmetric 0.2.4
+
+- Fix CRAN errors.
+
 # riskmetric 0.2.3
 
 - Fix issue with CRAN package documentation flags. (#311)

R/pkg_metric_na.R

@@ -3,7 +3,6 @@
 #' @param x a \code{pkg_metric} object to wrap in a \code{pkg_metric_na}
 #' subclass
 #' @param message an optional message explaining why a metric is not applicable.
-#' @param a \code{pkg_metric} object after wrap in a \code{pkg_metric_na}
 #' @return a \code{pkg_metric} object after wrap in a \code{pkg_metric_na}
 #' @keywords internal
 as_pkg_metric_na <- function(x, message = NULL) {

R/pkg_ref_class.R

@@ -24,14 +24,14 @@
 #'
 #' \itemize{
 #' \item{\strong{\code{pkg_ref}}}{ A default class for general metadata
-#' collection.
+#' collection.}
 #' \itemize{
 #' \item{\strong{\code{pkg_source}}}{ A reference to a source code directory.}
 #' \item{\strong{\code{pkg_install}}}{ A reference to a package installation
 #' location in a package library. A specific library can be passed by passing
 #' the path to the library as the parameter `lib.loc`}
 #' \item{\strong{\code{pkg_remote}}}{ A reference to package metadata on a
-#' remote server.
+#' remote server.}
 #' \itemize{
 #' \item{\strong{\code{pkg_cran_remote}}}{ A reference to package
 #' information pulled from the CRAN repository.}
@@ -42,8 +42,6 @@
 #' }
 #' }
 #' }
-#' }
-#' }
 #'
 #' @section Package Cohorts:
 #'

cran-comments.md

@@ -1,7 +1,6 @@
-## riskmetric 0.2.2
+## riskmetric 0.2.4
 
-- Bug fixes
-- Fixes issue with S3 method consistency. 
+Resolved issues with CRAN checks.
 
 Tested on Ubuntu Jammy, GitHub Action, and RHub.
 

tests/testthat/setup_test_packages.R

@@ -6,10 +6,12 @@
 # evaluation process. Errors are better tested in metric-specific unit tests.
 
 # create a temporary library for installed test packages
+options(repos = "fake-cran.fake-r-project.org")
 templib <- tempfile("riskmetric_test_lib_")
+oldLibs <- .libPaths()
 dir.create(templib)
 
-withr::with_libpaths(templib, {
+withr::with_libpaths(c(templib, oldLibs), {
  devtools::install(
  file.path(test_path(), "test_packages", "pkgsourcegood"),
  quiet = TRUE,
@@ -60,14 +62,14 @@ score_stdlibs_install <- pkg_score(
  error_handler = score_error_zero)
 
 # a representative "good" quality package available on CRAN, but not installed
-pkg_ref_cran_remote_good <- pkg_cran("pkgcranremotegood")
+pkg_ref_cran_remote_good <- pkg_cran("pkgcranremotegood", repos = "fake-cran.fake-r-project.org")
 assess_cran_remote_good <- pkg_assess(pkg_ref_cran_remote_good)
 score_cran_remote_good <- pkg_score(
  assess_cran_remote_good,
  error_handler = score_error_zero)
 
 # a representative "bad" quality package available on CRAN, but not installed
-pkg_ref_cran_remote_bad <- pkg_cran("pkgcranremotebad")
+pkg_ref_cran_remote_bad <- pkg_cran("pkgcranremotebad", repos = "fake-cran.fake-r-project.org")
 assess_cran_remote_bad <- pkg_assess(pkg_ref_cran_remote_bad)
 score_cran_remote_bad <- pkg_score(
  assess_cran_remote_bad,

tests/testthat/test_pkg_ref.R

@@ -1,3 +1,5 @@
+options(repos = "fake-cran.fake-r-project.org")
+
 test_that("get_pkg_ref_classes appropriately captures full class chain", {
  skip_on_cran()