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logrx v0.3.0 #212

Merged
merged 121 commits into from
Sep 26, 2023
Merged

logrx v0.3.0 #212

merged 121 commits into from
Sep 26, 2023

Commits on Feb 14, 2023

  1. add rds saving option

    @parmsam-pfizer
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  2. add arg to include nested Rds export

    @parmsam-pfizer
    parmsam-pfizer committed Feb 14, 2023
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  3. update session_info element in log_list to original output

    @parmsam-pfizer
    parmsam-pfizer committed Feb 14, 2023
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  4. fix roxygen and update documentation

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Commits on Feb 15, 2023

  1. filter rds fields based on log_cleanup() and to_report

    @parmsam-pfizer
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  2. add unit test for include_rds

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  3. add include_rds arg to axecute and update doc

    @parmsam-pfizer
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  4. update newsmd

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  5. rmarkdown renders, functions mostly capture, only errors get logged

    @nicholas-masel
    nicholas-masel committed Feb 15, 2023
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Commits on Feb 21, 2023

  1. update include_rds roxygen2 default

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  2. use purrr::map2 instead of Map

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    parmsam-pfizer committed Feb 21, 2023
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Commits on Feb 22, 2023

  1. add log reading functions

    @parmsam-pfizer
    parmsam-pfizer committed Feb 22, 2023
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Commits on Feb 27, 2023

  1. Move the capture output to the write function

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  2. update session info capture test to capture.output of session info obj

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Commits on Mar 1, 2023

  1. add readr to DESCRIPTION file

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  2. update documentation and style for tidy

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    parmsam-pfizer committed Mar 1, 2023
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  3. add unit test

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  4. Update pkgdown site yml

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  5. Update newsmd with new read_log_file

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    parmsam-pfizer committed Mar 1, 2023
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Commits on Mar 7, 2023

  1. add arg to capture repo urls and ensure unit tests

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  2. update news md

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  3. Wrap predicate function in where()

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Commits on Mar 14, 2023

  1. default parsed log to already nested log

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  2. Merge branch '162_parse_log' of https://github.com/parmsam-pfizer/logrx… 

    … into 162_parse_log
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Commits on Jun 22, 2023

  1. Merge branch 'dev' into 162_alt_export

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  2. Merge pull request #184 from pharmaverse/main 

    FFWD dev after hotfix
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Commits on Jun 26, 2023

  1. Merge branch 'dev' into 167_capture_repo_urls

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  2. Merge branch 'dev' into 162_alt_export

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Commits on Jun 29, 2023

  1. feat: #179 bootstrap 5

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  2. fix: #179 comment out mac rcmd check

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Commits on Jul 3, 2023

  1. resolve conflict

    @nmasel
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  2. resolve conflict

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  3. Merge branch '140-feature-request-create-unit-test-for-rmd-files' int… 

    …o dev
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  4. Revert "Merge branch '140-feature-request-create-unit-test-for-rmd-fi… 

    …les' into dev"

This reverts commit df6eb4d, reversing
changes made to 9ae9814.
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  5. Revert "resolve conflict" 

    This reverts commit ce6a9d0.
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  6. Revert "resolve conflict" 

    This reverts commit 858ff84.
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Commits on Jul 6, 2023

  1. Update R/get.R 

    Co-authored-by: Nicholas Masel <61123199+nicholas-masel@users.noreply.github.com>
    @bms63 @nicholas-masel
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  2. Update check-standard.yaml

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  3. Merge pull request #191 from pharmaverse/rewind_dev 

    Rewind dev
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  4. Merge branch 'dev' into 162_alt_export

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  5. Merge pull request #164 from parmsam-pfizer/162_alt_export 

    Add argument for log_write to export log object as Rds
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  6. Merge branch 'dev' into 179_website_refresh

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  7. Merge pull request #187 from pharmaverse/179_website_refresh 

    Closes #179 website refresh
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Commits on Jul 9, 2023

  1. Disable warning when text file is missing final EOL

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  2. Create spell check workflow

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Commits on Jul 10, 2023

  1. Merge branch 'dev' into 167_capture_repo_urls

    @parmsam-pfizer
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  2. fix unit tests

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  3. update doc

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Commits on Jul 12, 2023

  1. remove remove_log_object arg from axecute

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Commits on Jul 13, 2023

  1. Merge branch 'dev' into 162_parse_log

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Commits on Jul 14, 2023

  1. fix test and approved vignette to pass remove_log_obj TRUE condition

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  2. update news md file

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Commits on Jul 24, 2023

  1. Add write packages permissions

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  2. resolve test-parse error

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Commits on Jul 25, 2023

  1. Closes #140

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Commits on Jul 27, 2023

  1. Update NEWS.md 

    Co-authored-by: Nicholas Masel <61123199+nicholas-masel@users.noreply.github.com>
    @parmsam-pfizer @nicholas-masel
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  2. Update R/axecute.R 

    Co-authored-by: Nicholas Masel <61123199+nicholas-masel@users.noreply.github.com>
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    parmsam-pfizer and nicholas-masel authored Jul 27, 2023
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Commits on Aug 4, 2023

  1. add library lint

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  2. add lint, xml2 dependencies

    @nmasel
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  3. fix examples

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Commits on Aug 7, 2023

  1. lint write test

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  2. update news

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  3. pkgdown update

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  4. Merge pull request #169 from parmsam-pfizer/167_capture_repo_urls 

    Add argument to capture repo URLs
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  5. hide remove log obj false code block

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  6. add lifecycle deprecration stop

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  7. add ... to axecute roxygen2

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  8. Merge branch 'dev' into 182-rmv-remove_log_object-arg

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  9. rebuild documentation

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  10. fix axecute unit test

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Commits on Aug 10, 2023

  1. changed design so library call linter is default

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  2. Merge branch 'dev' into 163-feature-request-consider-mandatory-lint-f… 

    …or-library-calls-to-be-at-top-of-script
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  3. Merge branch 'dev' into 162_parse_log

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Commits on Aug 14, 2023

  1. Update NEWS.md 

    Co-authored-by: Ben Straub <ben.x.straub@gsk.com>
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Commits on Aug 21, 2023

  1. Rewrote action

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  2. Implemented spellcheck recommendations

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  3. Merge pull request #194 from pharmaverse/182-rmv-remove_log_object-arg 

    Fix #182 - Remove argument for remove_log_object in axecute()
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  4. Merge branch 'dev' into 162_parse_log

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  5. Update DESCRIPTION

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Commits on Aug 22, 2023

  1. add methods for lifecycle condition

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  2. declare methods pkg

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  3. declare missing pkgs for funcs

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  4. fix test to not include remove_log_object arg

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Commits on Aug 23, 2023

  1. Merge branch 'dev' into 159-185-blank-line-spellcheck

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Commits on Aug 30, 2023

  1. Merge branch 'dev' into 163-feature-request-consider-mandatory-lint-f… 

    …or-library-calls-to-be-at-top-of-script
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  2. move lintr to suggests

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  3. default lint option back to FALSE

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  4. pkgdown and vignette updates

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  5. skip test is xml2 is also not installed

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Commits on Sep 8, 2023

  1. Merge pull request #197 from pharmaverse/163-feature-request-consider… 

    …-mandatory-lint-for-library-calls-to-be-at-top-of-script

Closes #163, #202
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  2. Merge branch 'dev' into 140-feature-request-create-unit-test-for-rmd-… 

    …files
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  3. Update NEWS.md

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  4. Update WORDLIST

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  5. Merge branch 'dev' into 159-185-blank-line-spellcheck

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  6. Merge branch 'dev' into 162_parse_log

    @bms63
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  7. Update test-axecute.R

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  8. Merge pull request #195 from pharmaverse/159-185-blank-line-spellcheck 

    159 185 blank line spellcheck
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  9. Merge branch 'dev' into 140-feature-request-create-unit-test-for-rmd-… 

    …files
    @bms63
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  10. Update DESCRIPTION

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Commits on Sep 10, 2023

  1. Merge branch 'dev' into 162_parse_log

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Commits on Sep 12, 2023

  1. move readr to suggests

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    parmsam-pfizer committed Sep 12, 2023
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  2. ensure readr is checked for in read_ function

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    parmsam-pfizer committed Sep 12, 2023
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  3. update test to check if suggest is available

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    parmsam-pfizer committed Sep 12, 2023
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  4. remove readr from roxygen2 header importFrom

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    parmsam-pfizer committed Sep 12, 2023
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  5. add lifecycle and methods to imports, xml2 to suggests

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    parmsam-pfizer committed Sep 12, 2023
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Commits on Sep 13, 2023

  1. Update WORDLIST

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    bms63 authored Sep 13, 2023
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  2. Merge pull request #196 from pharmaverse/140-feature-request-create-u… 

    …nit-test-for-rmd-files

Closes #140
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  3. Merge branch 'dev' into 162_parse_log

    @bms63
    bms63 authored Sep 13, 2023
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  4. reconcile description file

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    parmsam-pfizer committed Sep 13, 2023
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  5. remove mention of 'previous'

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    parmsam-pfizer committed Sep 13, 2023
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Commits on Sep 14, 2023

  1. fix: #198 remove 3.5, 3.6 checks

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    bms63 authored Sep 14, 2023
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  2. fix: #198 bump to R version 4.0

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    bms63 authored Sep 14, 2023
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  3. docs: #198 news blurb

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    bms63 authored Sep 14, 2023
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  4. chore: #198 typos

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    bms63 authored Sep 14, 2023
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Commits on Sep 22, 2023

  1. Merge pull request #166 from parmsam-pfizer/162_parse_log 

    Add function to parse previous text log file
    @bms63
    bms63 authored Sep 22, 2023
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  2. Merge pull request #210 from pharmaverse/198_wf_checks 

    Closes #198 Version bumped and workflow R checks updated
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    bms63 authored Sep 22, 2023
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  3. export read_log_file

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    parmsam-pfizer committed Sep 22, 2023
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Commits on Sep 25, 2023

  1. replace utf line and double line utf8 to ascii

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    parmsam-pfizer committed Sep 25, 2023
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  2. use tidyselect instead of dplyr for where()

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    parmsam-pfizer authored Sep 25, 2023
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  3. add tidyselect as suggest

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    parmsam-pfizer committed Sep 25, 2023
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Commits on Sep 26, 2023

  1. fix: ignore html documents for test. output ex1 as html. prevent pdf … 

    …from being created. some typos
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    bms63 committed Sep 26, 2023
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