Some tree algorithms removed.

src/frontend/src/Components/Project/CreateDataset/DatasetInfoStepCard.tsx

@@ -96,7 +96,7 @@ const datasetDescriptions = {
     [TypingDataType.MLVA]: "The dataset type MLVA is designed to analyze MLVA data using its common allelic profiles " +
     "formats and adds extra distance metrics to the analyses options.",
 
-    [TypingDataType.FASTA]: "The dataset type Aligned Sequences (FASTA) is designed to analyze sequence data " +
+    /*[TypingDataType.FASTA]: "The dataset type Aligned Sequences (FASTA) is designed to analyze sequence data " +
     "available in FASTA format. The sequences need to be all of the same size. " +
     "Sequences of different sizes will be excluded.",
 
@@ -111,5 +111,5 @@ const datasetDescriptions = {
     [TypingDataType.SNP_WITHOUT_EXPLICIT_ID]: "The dataset type Single Nucleotide Polymorphism (SNP) " +
     "(without explicit ID) is designed to analyze SNP data based on the presence and absence of a SNP, and no " +
     "explicit ID was attributed to the entire SNP profile. The sequences need to be all of the same size. " +
-    "Sequences of different sizes will be excluded."
+    "Sequences of different sizes will be excluded."*/
 }

src/frontend/src/Components/Project/CreateDataset/TypingDataStepCard.tsx

@@ -108,7 +108,7 @@ const typingDataExamples = {
     "  (...)\n" +
     "This files should not contain missing data. If any allele missing data is found the entire line is discarded.",
 
-    [TypingDataType.FASTA]: "The data format for the typing data should be as follows. Load a text file containing " +
+    /*[TypingDataType.FASTA]: "The data format for the typing data should be as follows. Load a text file containing " +
     "only the sequences. All the sequences should have the same length. A sequential ID identified will be " +
     "attributed to each sequence based on the order of the sequences in the file. The Fasta header will be used " +
     "to identify the isolate when you click on it. This format can also be used to analyze SNP data.  An example " +
@@ -135,5 +135,5 @@ const typingDataExamples = {
     [TypingDataType.SNP_WITHOUT_EXPLICIT_ID]: "The dataset type Single Nucleotide Polymorphism (SNP) (without " +
     "explicit ID) is designed to analyze SNP data based on the presence and absence of a SNP, and no explicit ID " +
     "was attributed to the entire SNP profile. The sequences need to be all of the same size. Sequences of " +
-    "different sizes will be excluded."
+    "different sizes will be excluded."*/
 }

src/frontend/src/Components/Project/DatasetDetails/ComputeTreesCard.tsx

@@ -3,8 +3,8 @@ import Typography from "@mui/material/Typography"
 import {Button, Menu, MenuItem} from "@mui/material"
 import * as React from "react"
 import {useNavigate, useParams} from "react-router-dom"
-import {WebUiUris} from "../../../Pages/WebUiUris"
 import {TreesIcon} from "../../Shared/Icons";
+import {computeTreeOptions} from "../ProjectStructure/Datasets/Dataset/Trees/useTreesTreeItem"
 
 /**
  * Card for the compute trees feature.
@@ -17,29 +17,6 @@ export function ComputeTreesCard() {
     const open = Boolean(anchorEl)
     const handleClose = () => setAnchorEl(null)
 
-    const computeTreeOptions = [
-        {
-            label: "goeBURST",
-            url: WebUiUris.computeGoeburst(projectId!, datasetId!)
-        },
-        {
-            label: "goeBURST Full MST",
-            url: WebUiUris.computeGoeburstFullMst(projectId!, datasetId!)
-        },
-        {
-            label: "Hierarchical Clustering",
-            url: WebUiUris.computeHierarchicalClustering(projectId!, datasetId!)
-        },
-        // {
-        //     label: "Neighbor Joining",
-        //     url: WebUiUris.computeNeighborJoining(projectId!, datasetId!)
-        // },
-        {
-            label: "nLV Graph",
-            url: WebUiUris.computeNlvGraph(projectId!, datasetId!)
-        }
-    ]
-
     return <Paper sx={{
         p: 4,
         display: "flex",
@@ -69,7 +46,7 @@ export function ComputeTreesCard() {
             open={open}
             onClose={handleClose}
         >
-            {computeTreeOptions.map((option) => (
+            {computeTreeOptions(projectId!, datasetId!).map((option) => (
                 <MenuItem
                     key={option.label}
                     onClick={() => {

src/frontend/src/Components/Project/ProjectStructure/Datasets/Dataset/Trees/useTreesTreeItem.ts

@@ -8,22 +8,22 @@ export const computeTreeOptions = (projectId: string, datasetId: string) => [
         label: "goeBURST",
         url: WebUiUris.computeGoeburst(projectId, datasetId)
     },
-    {
+    /*{
         label: "goeBURST Full MST",
         url: WebUiUris.computeGoeburstFullMst(projectId, datasetId)
     },
     {
         label: "Hierarchical Clustering",
         url: WebUiUris.computeHierarchicalClustering(projectId, datasetId)
     },
-    // {
-    //     label: "Neighbor Joining",
-    //     url: WebUiUris.computeNeighborJoining(projectId, datasetId)
-    // },
+    {
+        label: "Neighbor Joining",
+        url: WebUiUris.computeNeighborJoining(projectId, datasetId)
+    },
     {
         label: "nLV Graph",
         url: WebUiUris.computeNlvGraph(projectId, datasetId)
-    }
+    }*/
 ]
 
 /**

src/frontend/src/Pages/Project/CreateDataset/useCreateDataset.ts

@@ -20,10 +20,10 @@ export enum CreateDatasetStep {
 export enum TypingDataType {
     MLST = "Multi-Locus Sequence Typing (MLST)",
     MLVA = "Multi-Locus Variable Number Tandem Repeat Analysis (MLVA)",
-    FASTA = "Aligned Sequences (FASTA)",
+    /*FASTA = "Aligned Sequences (FASTA)",
     ALIGNED_SEQUENCES = "Aligned Sequences",
     SNP = "Single Nucleotide Polymorphism (SNP)",
-    SNP_WITHOUT_EXPLICIT_ID = "Single Nucleotide Polymorphism (SNP) (without explicit ID)",
+    SNP_WITHOUT_EXPLICIT_ID = "Single Nucleotide Polymorphism (SNP) (without explicit ID)",*/
 }