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BrapiCoordinatorSelby committed Sep 4, 2024
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39 changes: 9 additions & 30 deletions content/00.front-matter.md
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Expand Up @@ -31,47 +31,26 @@ Published: {{manubot.date_long}}

{## Template for listing authors ##}
{% for author in manubot.authors %}
+ **{{author.name}}**
**{{author.name}}**
{% if author.corresponding is defined and author.corresponding == true -%}^[](#correspondence)^{%- endif -%}
<br>
{%- set has_ids = false %}
{%- if author.orcid is defined and author.orcid is not none %}
{%- set has_ids = true %}
![ORCID icon](images/orcid.svg){.inline_icon width=16 height=16}
[{{author.orcid}}](https://orcid.org/{{author.orcid}})
[![ORCID icon](images/orcid.svg){.inline_icon width=16 height=16}](https://orcid.org/{{author.orcid}})
{%- endif %}
{%- if author.github is defined and author.github is not none %}
{%- set has_ids = true %}
· ![GitHub icon](images/github.svg){.inline_icon width=16 height=16}
[{{author.github}}](https://github.com/{{author.github}})
{%- endif %}
{%- if author.twitter is defined and author.twitter is not none %}
{%- set has_ids = true %}
· ![Twitter icon](images/twitter.svg){.inline_icon width=16 height=16}
[{{author.twitter}}](https://twitter.com/{{author.twitter}})
{%- endif %}
{%- if author.mastodon is defined and author.mastodon is not none and author["mastodon-server"] is defined and author["mastodon-server"] is not none %}
{%- set has_ids = true %}
· ![Mastodon icon](images/mastodon.svg){.inline_icon width=16 height=16}
[\@{{author.mastodon}}@{{author["mastodon-server"]}}](https://{{author["mastodon-server"]}}/@{{author.mastodon}})
{%- endif %}
{%- if has_ids %}
<br>
{%- endif %}
<small>
{% endfor %}

<br>
<br>

{% for author in manubot.authors %}
{%- if author.affiliations is defined and author.affiliations|length %}
{{author.affiliations | join('; ')}}
{%- endif %}
{%- if author.funders is defined and author.funders|length %}
· Funded by {{author.funders | join('; ')}}
{%- endif %}
</small>
{% endfor %}

::: {#correspondence}
✉ — Correspondence possible via {% if manubot.ci_source is defined -%}[GitHub Issues](https://github.com/{{manubot.ci_source.repo_slug}}/issues){% else %}GitHub Issues{% endif %}
✉ — Corresponding author email:
{% if manubot.authors|map(attribute='corresponding')|select|max -%}
or email to
{% for author in manubot.authors|selectattr("corresponding") -%}
{{ author.name }} \<{{ author.email }}\>{{ ", " if not loop.last else "." }}
{% endfor %}
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2 changes: 2 additions & 0 deletions content/01.abstract.md
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Expand Up @@ -6,3 +6,5 @@ The successful implementation of these methods depends on proper data management
The Breeding API (BrAPI) project is an international effort that is enabling more efficient data management through the development of interoperable databases and tools that can be used to share and interpret breeding-related data.
This community driven standard is software agnostic, open-source, and can be used by anyone interested in plant breeding, phenotyping, germplasm, genotyping, and agronomy data management.
This manuscript presents an overview of the BrAPI project, the substantial growth of the data standard, and the wide variety of BrAPI-compatible, community-built tools for breeding and research.

## Author Summary
17 changes: 5 additions & 12 deletions content/90.back-matter.md
Original file line number Diff line number Diff line change
@@ -1,15 +1,3 @@
## Data Availability Statement {.page_break_before}

No data was generated from this project.

## Code Availability Statement

The all of software and documentation generated by the BrAPI project is free, public, and open source. Everything is available under the MIT open-source license and can be accessed through [brapi.org](https://brapi.org). Most of the other software projects referenced and discussed here are also open source and the text contain links to their repositories or project pages. However, the authors take no responsibility for their availability or licensing.

## References {.page_break_before}

<!-- Auto generated references here -->
<div id="refs"></div>

## Acknowledgements

Expand All @@ -28,6 +16,11 @@ The authors would like to acknowledge the following funding sources:
+ The work was supported by the German Research Foundation DFG under the grant agreement number 442032008 (NFDI4Biodiversity). NFDI4Biodiversity is part of NFDI, the National Research Data Infrastructure in Germany ([www.nfdi.de](www.nfdi.de)).
+ The Bill and Malinda Gates Foundation in cooperation with the Excellence in Breeding Platform of the CGIAR

## References {.page_break_before}

<!-- Auto generated references here -->
<div id="refs"></div>

## Author Contributions {.page_break_before}

+ **Peter Selby**: Peter wrote and edited a significant portion of the manuscript. Peter has been the BrAPI Project Coordinator since 2017, managing the day-to-day operations of the BrAPI project.
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