Remove dependencies on maptools and rgeos #374
Workflow file for this run
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| # NOTE: This workflow is overkill for most R packages | |
| # check-standard.yaml is likely a better choice | |
| # usethis::use_github_action("check-standard") will install it. | |
| # | |
| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # vdiffr & shinytest only runs on mac r-release since the results aren't cross-platform | |
| - {os: macOS-latest, r: 'release', visual_tests: true, node: "14.x", shinytest: true} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-latest, r: '4.1'} | |
| - {os: windows-latest, r: '3.6'} | |
| - {os: ubuntu-latest, r: 'devel'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| - {os: ubuntu-latest, r: 'oldrel-2'} | |
| - {os: ubuntu-latest, r: 'oldrel-3'} | |
| - {os: ubuntu-latest, r: 'oldrel-4'} | |
| env: | |
| VISUAL_TESTS: ${{ matrix.config.visual_tests }} | |
| SHINYTEST: ${{ matrix.config.shinytest }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }} | |
| plotly_username: ${{ secrets.PLOTLY_USERNAME }} | |
| plotly_api_key: ${{ secrets.PLOTLY_API_KEY }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: install-r | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 3 | |
| needs: check | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 | |
| - name: Install kaleido | |
| if: matrix.config.visual_tests == true | |
| run: | | |
| sudo chown -R $UID $CONDA # https://github.com/nextstrain/conda/issues/5 | |
| Rscript -e "reticulate::install_miniconda()" | |
| Rscript -e "reticulate::conda_install('r-reticulate', 'python-kaleido')" | |
| Rscript -e "reticulate::conda_install('r-reticulate', 'plotly', channel = 'plotly')" | |
| Rscript -e "reticulate::use_miniconda('r-reticulate')" | |
| - name: Install shinytest deps | |
| if: matrix.config.shinytest == true | |
| run: | | |
| Rscript -e 'shinytest::installDependencies()' | |
| R CMD install . | |
| shell: bash | |
| # Run test() before R CMD check since, for some reason, rcmdcheck::rcmdcheck() skips vdiffr tests | |
| - name: Run Tests | |
| run: | | |
| options(crayon.enabled = TRUE, testthat.progress.max_fails=1000) | |
| res <- devtools::test() | |
| df <- as.data.frame(res) | |
| if (sum(df$failed) > 0 || any(df$error)) stop("GHA CI tests failed") | |
| shell: Rscript {0} | |
| # Upload the whole pkg since tests where run with devtools::test() | |
| - name: Upload check results | |
| if: always() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: ./ | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| check-dir: '"check"' | |
| # Run check with --no-tests since we ran them abve | |
| # 2023-01-03: `{purrr}` v1.0.0 had trouble on Windows without the `--no-multiarch` | |
| # https://github.com/plotly/plotly.R/pull/2221 | |
| args: 'c("--no-tests", "--no-manual", "--as-cran", "--no-multiarch")' | |
| error-on: '"warning"' | |
| #- name: Show testthat output | |
| # if: always() | |
| # run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| # shell: bash |