figs #968
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Workflow | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| black_format_MUST_PASS: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.7.12 | |
| uses: actions/setup-python@v2 | |
| with: | |
| # Change this based on the python version in Google colab | |
| # actions/setup-python@v2 does not have 3.7.13 | |
| python-version: '3.7.12' | |
| - name: Install dependencies | |
| run: | | |
| pip install black[jupyter]==22.3.0 # Change this based on .pre-commit-config.yaml | |
| - name: Check code quality | |
| run: | | |
| black --check notebooks/book1/*/*.ipynb | |
| black --check notebooks/book2/*/*.ipynb | |
| static_import_check_MUST_PASS: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v2 | |
| - name: Set up Python 3.7.12 | |
| uses: actions/setup-python@v2 | |
| with: | |
| # Change this based on the python version in Google colab | |
| # actions/setup-python@v2 does not have 3.7.13 | |
| python-version: '3.7.12' | |
| - name: Install dependencies | |
| run: | | |
| pip install -U --no-cache-dir -r requirements-dev.txt | cat | |
| pip install -U --no-cache-dir -r requirements.txt | cat | |
| - name: Check static imports | |
| run: | | |
| pytest -n auto -s --verbose tests/test_imports.py | |
| execute_current_PR_notebooks_MUST_PASS: | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'pull_request' # Run only on pull requests | |
| needs: [black_format_MUST_PASS, static_import_check_MUST_PASS] | |
| container: texlive/texlive:TL2020-historic | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 # fetch latest 2 commits to see which notebooks were touched by the last commit | |
| - name: Display notebook modification time | |
| shell: bash | |
| run: | | |
| git ls-files 'notebooks/book**.ipynb' -z | xargs -0 -n1 -I{} -- git log -1 --format='%at {}' {} | sort -r | |
| - name: Setup Python 3.7.13 (current colab version) | |
| shell: bash | |
| run: | | |
| curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --output miniconda.sh | |
| mkdir /root/.conda | |
| bash miniconda.sh -b | |
| rm miniconda.sh | |
| echo "export PATH=\"\$HOME/miniconda3/bin:\$PATH\"" >> /root/.bashrc | |
| echo "source \"\$HOME/miniconda3/bin/activate\"" >> /root/.bashrc | |
| source /root/.bashrc | |
| conda create -n py37 python=3.7.13 -y | |
| echo "conda activate py37" >> /root/.bashrc | |
| - name: Install requirements | |
| shell: bash | |
| run: | | |
| source /root/.bashrc | |
| pip install -U --no-cache-dir -r requirements-dev.txt | cat | |
| pip install -U --no-cache-dir -r requirements.txt | cat | |
| apt update && xargs -a requirements-bash.txt apt install -y | |
| - name: Cache datasets | |
| id: cache-datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| /root/.keras/datasets | |
| /root/tensorflow_datasets | |
| ${{ github.workspace }}/data | |
| key: datasets | |
| - name: Check notebooks for errors | |
| shell: bash | |
| run: | | |
| source /root/.bashrc | |
| pytest -n auto -s --verbose tests/test_notebooks.py | |
| execute_all_notebooks: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| runner_id: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19] | |
| env: | |
| PYPROBML_GA_RUNNER_ID: ${{ matrix.runner_id }} | |
| runs-on: ubuntu-latest | |
| if: always() && github.event_name == 'push' # Don't run on pull requests | |
| needs: [black_format_MUST_PASS, static_import_check_MUST_PASS] | |
| container: texlive/texlive:TL2020-historic | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python 3.7.13 (current colab version) | |
| shell: bash | |
| run: | | |
| curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --output miniconda.sh | |
| mkdir /root/.conda | |
| bash miniconda.sh -b | |
| rm miniconda.sh | |
| echo "export PATH=\"\$HOME/miniconda3/bin:\$PATH\"" >> /root/.bashrc | |
| echo "source \"\$HOME/miniconda3/bin/activate\"" >> /root/.bashrc | |
| source /root/.bashrc | |
| conda create -n py37 python=3.7.13 -y | |
| echo "conda activate py37" >> /root/.bashrc | |
| - name: Install requirements | |
| shell: bash | |
| run: | | |
| source /root/.bashrc | |
| pip install -U --no-cache-dir -r requirements-dev.txt | cat | |
| pip install -U --no-cache-dir -r requirements.txt | cat | |
| apt update && xargs -a requirements-bash.txt apt install -y | |
| - name: Cache datasets | |
| id: cache-datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| /root/.keras/datasets | |
| /root/tensorflow_datasets | |
| ${{ github.workspace }}/data | |
| key: datasets | |
| - name: Check notebooks for errors | |
| shell: bash | |
| run: | | |
| source /root/.bashrc | |
| pytest -n auto -s --verbose tests/test_notebooks.py | |
| - name: Push figures to auto_generated_figures (does not run on pull requests) | |
| uses: peaceiris/actions-gh-pages@v3.6.1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: figures/ | |
| publish_branch: auto_generated_figures_${{ matrix.runner_id }} | |
| if: always() && github.event_name == 'push' # Don't run on pull requests | |
| - name: Push test-results to workflow_testing_indicator (does not run on pull requests) | |
| uses: peaceiris/actions-gh-pages@v3.6.1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: test_results/ | |
| publish_branch: workflow_testing_indicator_${{ matrix.runner_id }} | |
| if: always() && github.event_name == 'push' # Don't run on pull requests | |
| combine_and_publish_results: | |
| runs-on: ubuntu-latest | |
| if: always() && github.event_name == 'push' # Don't run on pull requests | |
| needs: [execute_all_notebooks] | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| pip install -U --no-cache-dir -r requirements-dev.txt | cat | |
| pip install -U --no-cache-dir -r requirements.txt | cat | |
| pip install -U --no-cache-dir tabulate | cat | |
| - name: Combine and publish results | |
| run: | | |
| python .github/scripts/combine_results.py --user_name ${{ github.repository }} | |
| python .github/scripts/create_figure_dashboard.py --user_name ${{ github.repository }} | |
| python .github/scripts/create_dashboard.py --user_name ${{ github.repository }} | |
| - name: Push figures to auto_generated_figures (does not run on pull requests) | |
| uses: peaceiris/actions-gh-pages@v3.6.1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: auto_generated_figures/ | |
| publish_branch: auto_generated_figures | |
| - name: Push test-results to workflow_testing_indicator (does not run on pull requests) | |
| uses: peaceiris/actions-gh-pages@v3.6.1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: workflow_testing_indicator/ | |
| publish_branch: workflow_testing_indicator | |
| update_notebooks_md: | |
| runs-on: ubuntu-latest | |
| if: always() && github.event_name == 'push' # Don't run on pull requests | |
| steps: | |
| - name: Clone the reference repository | |
| uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| pip install numpy pandas nbformat tabulate | |
| - name: Update notebooks.md | |
| run: | | |
| python .github/scripts/generate_notebooks_md.py | |
| - name: Push notebooks.md to notebooks_md (does not run on pull requests) | |
| if: always() | |
| uses: peaceiris/actions-gh-pages@v3.6.1 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: notebooks_md/ | |
| publish_branch: auto_notebooks_md |