Official Documentation: Available here.
We developed the MSCI Python library to tackle the challenges of peptide identification in mass spectrometry-based proteomics, particularly regarding indistinguishable peptides. MSCI provides a comprehensive toolset that streamlines the workflow from data import to spectral analysis, enabling researchers to effectively evaluate fragmentation similarity scores among peptide sequences and pinpoint indistinguishable peptide pairs in a given proteome.
- Python 3.8 - 3.11
- Matchms
- biopython
You can install MSCI via pip:
pip install MSCI==0.2.0