fix typo #13
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name: CI/CD Pipeline | |
on: | |
push: | |
branches: | |
- main | |
- "ci-*" | |
pull_request: | |
branches: | |
- main | |
jobs: | |
check_code_quality: | |
name: Check Code Quality | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.8" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install .[quality] | |
- name: Run Ruff code quality checks | |
run: | | |
ruff check tests src setup.py --output-format=github | |
ruff format --check tests src setup.py | |
tests: | |
needs: check_code_quality | |
strategy: | |
matrix: | |
test: [unit] | |
os: [ubuntu-latest, windows-latest] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
runs-on: ${{ matrix.os }} | |
continue-on-error: ${{ matrix.test == 'integration' }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install uv --upgrade | |
uv pip install --system "biosets[test] @ ." | |
- name: Run Tests | |
run: | | |
mkdir -p reports/${{ matrix.test }}_tests | |
python3 -m pytest -m ${{ matrix.test }} -n 2 --dist loadfile -sv ./tests/ --junitxml=reports/${{ matrix.test }}_tests/results.xml | |
- name: Upload Unit Test Results | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ matrix.test }}-test-reports | |
path: reports/${{ matrix.test }}_tests/results.xml | |