Taxon tree updates #1508
Workflow file for this run
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| name: Build | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ['v*'] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| env: | |
| LATEST_PY_VERSION: '3.11' | |
| COVERAGE_ARGS: '--cov --cov-report=term --cov-report=xml' | |
| XDIST_ARGS: '--numprocesses=auto' | |
| jobs: | |
| # Run unit tests for each supported python version | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: snok/install-poetry@v1.4 | |
| with: | |
| virtualenvs-in-project: true | |
| # Cache packages per python version, and reuse until lockfile changes | |
| - name: Cache python packages | |
| id: cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: .venv | |
| key: venv-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
| - name: Install dependencies | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: poetry install -v -E all | |
| # Run tests with coverage report | |
| - name: Run tests | |
| run: poetry run pytest -rs -x -vv ${{ env.XDIST_ARGS }} ${{ env.COVERAGE_ARGS }} | |
| # Latest python version: send coverage report to codecov | |
| - name: "Upload coverage report to Codecov" | |
| if: ${{ matrix.python-version == env.LATEST_PY_VERSION }} | |
| uses: codecov/codecov-action@v4 | |
| # Run code analysis checks via pre-commit hooks | |
| analyze: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.LATEST_PY_VERSION }} | |
| - name: Run style checks & linting | |
| uses: pre-commit/action@v3.0.1 | |
| - name: Scan dependencies for known vulnerabilities | |
| uses: pypa/gh-action-pip-audit@v1.1.0 | |
| with: | |
| vulnerability-service: osv | |
| # Ignore issues with pip and setuptools versions used by the action itself | |
| ignore-vulns: | | |
| GHSA-cx63-2mw6-8hw5 | |
| PYSEC-2023-228 | |
| PYSEC-2022-43012 |