Fix doc, update continuous integration.

pyranges · Jun 19, 2024 · 0009d91 · 0009d91
1 parent 750afbc
commit 0009d91
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diff --git a/.github/workflows/continuous_integration.yml b/.github/workflows/continuous_integration.yml
@@ -21,7 +21,7 @@ jobs:
     - name: Install dependencies
       run: |
         # I am using the pip installed by conda, bad practice but OK in C/I I think
-        pip install pyranges-plot==0.0.23
+        pip install pyranges-plot==0.0.24
         pip install ruff pytest
     - name: Check formatting with ruff
       run: |

diff --git a/docs/index.rst b/docs/index.rst
@@ -2,10 +2,12 @@ Pyranges Plot documentation
 ===========================
 
 Pyranges Plot is a Python library specifically tailored to perform
-along `Pyranges<https://github.com/pyranges/pyranges_1.x.git>`_ objects. It provides
+along `Pyranges`_ objects. It provides
 user-friendly and customizable visualizations for genomic intervals datasets, a perfect
 tandem for Pyranges' efficient and intuitive genomic data manipulation methods.
 
+.. _Pyranges: https://github.com/pyranges/pyranges_1.x.git
+
 Plots can be produced in an interactive interface or in batch production, allowing easy
 data exploration as well as generation of high quality and reproducible figures. These plots
 can be based on either of two engines: Matplotlib and Plotly, to be defined by the user.

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -1,4 +1,5 @@
-Sphinx==7.3.7
-sphinx_autoapi
-sphinxcontrib-napoleon==0.7
-sphinx_rtd_theme
+pyranges_plot
+sphinx
+sphinx_rtd_theme
+sphinx.ext.autodoc
+sphinx.ext.napoleon