GA: adding actions

.github/workflows/build.yaml

@@ -1,26 +1,50 @@
-name: Build and test
+name: Build
 
-on: [push]
+on:
+  push:
+    branches: [main]
 
 jobs:
-  build:
-    runs-on: ubuntu-latest
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    needs: test
+    runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: ["3.10", "3.11"]
+        os: [ubuntu-20.04, macos-11]
 
     steps:
-      - uses: actions/checkout@v3
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.16.5
+        # env:
+        #   CIBW_SOME_OPTION: value
+        #    ...
         with:
-          python-version: ${{ matrix.python-version }}
-          cache: "pip" # caching pip dependencies
-          cache-dependency-path: "**/pyproject.toml"
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install .[dev]
-      - name: Test with pytest
-        run: |
-          pytest -m "not plot"
+        #   package-dir: .
+        #   output-dir: wheelhouse
+          config-file: "{package}/pyproject.toml"
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
+
+  make_sdist:
+    name: Make SDist
+    runs-on: ubuntu-latest
+    needs: build_wheels
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # Optional, use if you use setuptools_scm
+        submodules: false  # Optional, use if you have submodules
+
+    - name: Build SDist
+      run: pipx run build --sdist
+
+    - uses: actions/upload-artifact@v4
+      with:
+        name: cibw-sdist
+        path: dist/*.tar.gz

.github/workflows/docs.yaml

@@ -4,6 +4,9 @@ on:
   push:
     branches:
       - main
+    tags:
+      - "*"
+
 permissions:
   contents: write
 jobs:

.github/workflows/publish.yaml

@@ -0,0 +1,26 @@
+name: Publish to PyPI
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  pypi-publish:
+    name: Upload release to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs: [build_wheels, make_sdist]
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/qseek
+    permissions:
+      id-token: write  # IMPORTANT: this permission is mandatory for trusted publishing
+    steps:
+    - name: Download all the wheels and sdists
+      uses: actions/download-artifact@v3
+      with:
+        pattern: cibw-*
+        path: dist/
+    - name: Publish package distributions to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/test.yaml

@@ -0,0 +1,38 @@
+name: Formatting and tests
+
+on:
+  pull_request:
+  push:
+    branches:
+      - main
+    tags:
+      - "*"
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v3
+      - uses: pre-commit/action@v3.0.1
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: "pip" # caching pip dependencies
+          cache-dependency-path: "**/pyproject.toml"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[dev]
+      - name: Test with pytest
+        run: |
+          pytest -m "not plot"