v0.6.0

0.6.0 - Keppler-452b Goldilocks (2024-10-10)

Added

• option --filter_evidence to filter CIViC evidences based on type, direction, status, level and significance

Fixed

Dependencies

• updated black to version 24.3.0 due to moderate vulnerability CVE-2024-21503
• updated requests to version 2.31.0 due to moderate vulnerabilities CVE-2023-32681 and CVE-2024-35195

Deprecated

v0.5.5

0.5.5 - Sulfur Io (2024-09-09)

Added

Fixed

• issue #51
• issue #52

Dependencies

Deprecated

v0.5.4

0.5.4 - Sulfur Io (2024-07-24)

Added

Fixed

• issue #43 was not fully fixed with prior release (0.5.3)
• issue with doid.obo filepath
• issue with incomplete civic evidence items

Dependencies

Deprecated

v0.5.3

0.5.3 - Sulfur Io (2024-07-20)

Added

Fixed

• #43 missing disease ontology file (doid.obo) resulting in a non-usable query-api-civic

Dependencies

Deprecated

v0.5.2

0.5.2 - Sulfur Io (2024-07-17)

Added

Fixed

• fixed issue #37: a bug in query-api-civic that caused the containerized tool to fail when querying CIViC.

Dependencies

• pinned pandas to version 1.5.3 to fix deprecation issues with pandas 2.x in querynator and civicpy.

Deprecated

v0.5.1

0.5.1 - Sulfur Io (2024-07-03)

Added

Fixed

• fixed a severe bug in query-api-civic that made the tool unusable, the bug was introduced in v0.5.0.

Dependencies

Deprecated

v0.5.0

0.5.0 - Sulfur Io (2024-06-23)

Added

• CL option to specify cancer type when querying CIViC (-c --cancer)

Fixed

Dependencies

• pinned numpy to version 1.24.4 to fix pandas bug with numpy-v2

Deprecated

v.0.4.3

Fixed

• blankline in Changelog

v.0.4.2 - Stormy Saturn

0.4.2 - Stormy Saturn (2023-04-05)

Fixed

• Bug fixes to handle new CGI wildtype biomarkers
• civicpy cache will only be updated when civic is queried

v.0.4.1 - Stormy Saturn

0.4.1 - Stormy Saturn (2023-06-13)

Fixed

• Bug fixes to include all evidence of CIViC