Deploying to gh-pages from @ fb8d9fa 🚀

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ac2b2b210e7591f91a11e0d3eab1318d
+config: b35e2e0a8a46d66c8858ead2ca0b9e3b
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/index.html

@@ -215,9 +215,6 @@
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="../apidocs/decoders.html">Decoders (<code class="xref py py-mod docutils literal notranslate"><span class="pre">qiskit_qec.decoders</span></code>)</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><div class="visually-hidden">Toggle navigation of Decoders (qiskit_qec.decoders)</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
 <li class="toctree-l3"><a class="reference internal" href="../stubs/qiskit_qec.decoders.DecodingGraph.html">DecodingGraph</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../stubs/qiskit_qec.decoders.CircuitModelMatchingDecoder.html">CircuitModelMatchingDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../stubs/qiskit_qec.decoders.RepetitionDecoder.html">RepetitionDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../stubs/qiskit_qec.decoders.ThreeBitDecoder.html">ThreeBitDecoder</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../stubs/qiskit_qec.decoders.UnionFindDecoder.html">UnionFindDecoder</a></li>
 </ul>
 </li>
@@ -336,11 +333,8 @@ <h1>All modules for which code is available</h1>
 <li><a href="qiskit_qec/codes/codebase.html">qiskit_qec.codes.codebase</a></li>
 <li><a href="qiskit_qec/codes/qec_code.html">qiskit_qec.codes.qec_code</a></li>
 <li><a href="qiskit_qec/codes/stabsubsystemcodes.html">qiskit_qec.codes.stabsubsystemcodes</a></li>
-<li><a href="qiskit_qec/decoders/circuit_matching_decoder.html">qiskit_qec.decoders.circuit_matching_decoder</a></li>
 <li><a href="qiskit_qec/decoders/decoding_graph.html">qiskit_qec.decoders.decoding_graph</a></li>
 <li><a href="qiskit_qec/decoders/hdrg_decoders.html">qiskit_qec.decoders.hdrg_decoders</a></li>
-<li><a href="qiskit_qec/decoders/repetition_decoder.html">qiskit_qec.decoders.repetition_decoder</a></li>
-<li><a href="qiskit_qec/decoders/three_bit_decoder.html">qiskit_qec.decoders.three_bit_decoder</a></li>
 <li><a href="qiskit_qec/geometry/bounds.html">qiskit_qec.geometry.bounds</a></li>
 <li><a href="qiskit_qec/geometry/lattice.html">qiskit_qec.geometry.lattice</a></li>
 <li><a href="qiskit_qec/geometry/manifold.html">qiskit_qec.geometry.manifold</a></li>
@@ -391,7 +385,7 @@ <h1>All modules for which code is available</h1>
 
             <a href="https://github.com/pradyunsg/furo">Furo</a>
             <div class="last-updated">
-              Last updated on 2024/02/16</div>
+              Last updated on 2024/02/19</div>
           </div>
           <div class="right-details">
 

_modules/qiskit_qec/circuits/code_circuit.html

@@ -215,9 +215,6 @@
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="../../../apidocs/decoders.html">Decoders (<code class="xref py py-mod docutils literal notranslate"><span class="pre">qiskit_qec.decoders</span></code>)</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><div class="visually-hidden">Toggle navigation of Decoders (qiskit_qec.decoders)</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.DecodingGraph.html">DecodingGraph</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.CircuitModelMatchingDecoder.html">CircuitModelMatchingDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.RepetitionDecoder.html">RepetitionDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.ThreeBitDecoder.html">ThreeBitDecoder</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.UnionFindDecoder.html">UnionFindDecoder</a></li>
 </ul>
 </li>
@@ -388,29 +385,18 @@ <h1>Source code for qiskit_qec.circuits.code_circuit</h1><div class="highlight">
         <span class="k">pass</span></div>
 
 
-<div class="viewcode-block" id="CodeCircuit.measured_logicals">
-<a class="viewcode-back" href="../../../stubs/qiskit_qec.circuits.CodeCircuit.html#qiskit_qec.circuits.CodeCircuit.measured_logicals">[docs]</a>
-    <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">measured_logicals</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-<span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
-<span class="sd">        Returns a list of logical operators, each expressed as a list of qubits for which</span>
-<span class="sd">        the parity of the final readouts corresponds to the raw logical readout.</span>
-<span class="sd">        &quot;&quot;&quot;</span>
-        <span class="k">pass</span></div>
-
-
 <div class="viewcode-block" id="CodeCircuit.check_nodes">
 <a class="viewcode-back" href="../../../stubs/qiskit_qec.circuits.CodeCircuit.html#qiskit_qec.circuits.CodeCircuit.check_nodes">[docs]</a>
     <span class="nd">@abstractmethod</span>
-    <span class="k">def</span> <span class="nf">check_nodes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nodes</span><span class="p">,</span> <span class="n">ignore_extra_boundary</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">minimal</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+    <span class="k">def</span> <span class="nf">check_nodes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nodes</span><span class="p">,</span> <span class="n">ignore_extra_logical</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">minimal</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
 <span class="w">        </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">        Determines whether a given set of nodes are neutral. If so, also</span>
 <span class="sd">        determines any additional logical readout qubits that would be</span>
 <span class="sd">        flipped by the errors creating such a cluster and how many errors</span>
 <span class="sd">        would be required to make the cluster.</span>
 <span class="sd">        Args:</span>
 <span class="sd">            nodes (list): List of nodes, of the type produced by `string2nodes`.</span>
-<span class="sd">            ignore_extra_boundary (bool): If `True`, undeeded boundary nodes are</span>
+<span class="sd">            ignore_extra_logical (bool): If `True`, undeeded logical nodes are</span>
 <span class="sd">            ignored.</span>
 <span class="sd">            minimal (bool): Whether output should only reflect the minimal error</span>
 <span class="sd">            case.</span>
@@ -461,7 +447,7 @@ <h1>Source code for qiskit_qec.circuits.code_circuit</h1><div class="highlight">
 
             <a href="https://github.com/pradyunsg/furo">Furo</a>
             <div class="last-updated">
-              Last updated on 2024/02/16</div>
+              Last updated on 2024/02/19</div>
           </div>
           <div class="right-details">
 

_modules/qiskit_qec/circuits/css_code.html

@@ -215,9 +215,6 @@
 </li>
 <li class="toctree-l2 has-children"><a class="reference internal" href="../../../apidocs/decoders.html">Decoders (<code class="xref py py-mod docutils literal notranslate"><span class="pre">qiskit_qec.decoders</span></code>)</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><div class="visually-hidden">Toggle navigation of Decoders (qiskit_qec.decoders)</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
 <li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.DecodingGraph.html">DecodingGraph</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.CircuitModelMatchingDecoder.html">CircuitModelMatchingDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.RepetitionDecoder.html">RepetitionDecoder</a></li>
-<li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.ThreeBitDecoder.html">ThreeBitDecoder</a></li>
 <li class="toctree-l3"><a class="reference internal" href="../../../stubs/qiskit_qec.decoders.UnionFindDecoder.html">UnionFindDecoder</a></li>
 </ul>
 </li>
@@ -516,19 +513,6 @@ <h1>Source code for qiskit_qec.circuits.css_code</h1><div class="highlight"><pre
             <span class="bp">self</span><span class="o">.</span><span class="n">z_stabilizers</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">code</span><span class="o">.</span><span class="n">z_stabilizers</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">logical_x</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">code</span><span class="o">.</span><span class="n">logical_x</span>
             <span class="bp">self</span><span class="o">.</span><span class="n">logical_z</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">code</span><span class="o">.</span><span class="n">logical_z</span>
-        <span class="c1"># for the unionfind decoder</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">css_x_logical</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">logical_x</span>
-        <span class="bp">self</span><span class="o">.</span><span class="n">css_z_logical</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">logical_z</span>
-
-<div class="viewcode-block" id="CSSCodeCircuit.measured_logicals">
-<a class="viewcode-back" href="../../../stubs/qiskit_qec.circuits.CSSCodeCircuit.html#qiskit_qec.circuits.CSSCodeCircuit.measured_logicals">[docs]</a>
-    <span class="k">def</span> <span class="nf">measured_logicals</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
-        <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">basis</span> <span class="o">==</span> <span class="s2">&quot;x&quot;</span><span class="p">:</span>
-            <span class="n">measured_logicals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">logical_x</span>
-        <span class="k">else</span><span class="p">:</span>
-            <span class="n">measured_logicals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">logical_z</span>
-        <span class="k">return</span> <span class="n">measured_logicals</span></div>
-
 
     <span class="k">def</span> <span class="nf">_prepare_initial_state</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">qc</span><span class="p">,</span> <span class="n">qregs</span><span class="p">,</span> <span class="n">state</span><span class="p">):</span>
         <span class="k">if</span> <span class="n">state</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s2">&quot;1&quot;</span><span class="p">:</span>
@@ -633,7 +617,7 @@ <h1>Source code for qiskit_qec.circuits.css_code</h1><div class="highlight"><pre
 
 <div class="viewcode-block" id="CSSCodeCircuit.check_nodes">
 <a class="viewcode-back" href="../../../stubs/qiskit_qec.circuits.CSSCodeCircuit.html#qiskit_qec.circuits.CSSCodeCircuit.check_nodes">[docs]</a>
-    <span class="k">def</span> <span class="nf">check_nodes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nodes</span><span class="p">,</span> <span class="n">ignore_extra_boundary</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">minimal</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
+    <span class="k">def</span> <span class="nf">check_nodes</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">nodes</span><span class="p">,</span> <span class="n">ignore_extra_logical</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">minimal</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
         <span class="k">raise</span> <span class="ne">NotImplementedError</span></div>
 
 
@@ -777,7 +761,7 @@ <h1>Source code for qiskit_qec.circuits.css_code</h1><div class="highlight"><pre
 
             <a href="https://github.com/pradyunsg/furo">Furo</a>
             <div class="last-updated">
-              Last updated on 2024/02/16</div>
+              Last updated on 2024/02/19</div>
           </div>
           <div class="right-details">