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Merge pull request #395 from quantumjot/quantumjot-patch-1
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Update napari hub DESCRIPTION.md
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quantumjot authored Aug 10, 2023
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We developed `btrack` for cell tracking in time-lapse microscopy data.

![](https://raw.githubusercontent.com/lowe-lab-ucl/arboretum/master/examples/arboretum.gif)
![tracking2](https://github.com/quantumjot/btrack/assets/8217795/7b16381a-b7e5-4750-98c6-bcdfbe95b908)

<!--
## tutorials
* https://napari.org/tutorials/tracking/cell_tracking.html
-->


## associated plugins

* [napari-arboretum](https://www.napari-hub.org/plugins/napari-arboretum) - Napari plugin to enable track graph and lineage tree visualization.

## Installation

To install the `napari` plugin associated with `btrack` run the command.
Expand All @@ -40,9 +35,22 @@ To install the `napari` plugin associated with `btrack` run the command.
pip install btrack[napari]
```

If working on Apple Silicon make sure to also install the following
packages from `conda-forge`.
## Example data

You can try out the btrack plugin using sample data:

```sh
conda install -c conda-forge pyqt
python btrack/napari/examples/show_btrack_widget.py
```

which will launch `napari` and the `btrack` widget, along with some sample data.


## Setting parameters

There are detailed tips and instructions on parameter settings over at the [documentation](https://btrack.readthedocs.io/en/latest/user_guide/index.html).


## Associated plugins

* [napari-arboretum](https://www.napari-hub.org/plugins/napari-arboretum) - Napari plugin to enable track graph and lineage tree visualization.

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