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re-enable R-CMD & coverage
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polettif committed Jul 19, 2021
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180 changes: 90 additions & 90 deletions .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
@@ -1,90 +1,90 @@
# on:
# push:
# branches:
# - master
# pull_request:
# branches:
# - master
#
# name: R-CMD-check
#
# jobs:
# R-CMD-check:
# runs-on: ${{ matrix.config.os }}
#
# name: ${{ matrix.config.os }} (${{ matrix.config.r }})
#
# strategy:
# fail-fast: false
# matrix:
# config:
# #- {os: macOS-latest, r: 'devel'} # takes forever to run
# #- {os: macOS-latest, r: '4.0'}
# #- {os: windows-latest, r: 'devel'}
# - {os: windows-latest, r: '4.0'}
# - {os: windows-latest, r: '3.6'}
# - {os: ubuntu-18.04, r: '4.0', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
# - {os: ubuntu-18.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
#
# env:
# R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
# RSPM: ${{ matrix.config.rspm }}
#
# if: "!(contains(github.event.head_commit.message, 'ci skip')||contains(github.event.head_commit.message, 'skip ci'))"
# steps:
#
# - uses: actions/checkout@v2
#
# - uses: r-lib/actions/setup-r@master
# with:
# r-version: ${{ matrix.config.r }}
#
# - name: Query dependencies
# run: |
# install.packages('remotes')
# saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
# shell: Rscript {0}
#
# - name: Cache R packages
# if: runner.os != 'Windows'
# uses: actions/cache@v1
# with:
# path: ${{ env.R_LIBS_USER }}
# key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }}
# restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1-
#
# - name: Install system dependencies
# if: runner.os == 'Linux'
# env:
# RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
# run: |
# Rscript -e "remotes::install_github('r-hub/sysreqs')"
# sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
# sudo -s eval "$sysreqs"
#
# - name: Install dependencies
# run: |
# remotes::install_deps(dependencies = TRUE)
# remotes::install_cran("rcmdcheck")
# install.packages("lwgeom") # not auto-installed with sf
# install.packages("units") # not auto-installed with sf
# shell: Rscript {0}
#
# - name: Session info
# run: |
# options(width = 100)
# pkgs <- installed.packages()[, "Package"]
# sessioninfo::session_info(pkgs, include_base = TRUE)
# shell: Rscript {0}
#
# - name: Check
# env:
# _R_CHECK_CRAN_INCOMING_: false
# run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
# shell: Rscript {0}
#
# - name: Show testthat output
# if: always()
# run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
# shell: bash
#
on:
push:
branches:
- master
pull_request:
branches:
- master

name: R-CMD-check

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
#- {os: macOS-latest, r: 'devel'} # takes forever to run
#- {os: macOS-latest, r: '4.0'}
#- {os: windows-latest, r: 'devel'}
- {os: windows-latest, r: '4.0'}
- {os: windows-latest, r: '3.6'}
- {os: ubuntu-18.04, r: '4.0', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
- {os: ubuntu-18.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}

if: "!(contains(github.event.head_commit.message, 'ci skip')||contains(github.event.head_commit.message, 'skip ci'))"
steps:

- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
install.packages("lwgeom") # not auto-installed with sf
install.packages("units") # not auto-installed with sf
shell: Rscript {0}

- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}

- name: Check
env:
_R_CHECK_CRAN_INCOMING_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}

- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

100 changes: 50 additions & 50 deletions .github/workflows/test-coverage.yaml
Original file line number Diff line number Diff line change
@@ -1,50 +1,50 @@
# on:
# push:
# branches:
# - master
# pull_request:
# branches:
# - master
#
# name: test-coverage
#
# jobs:
# test-coverage:
# runs-on: ubuntu-20.04
# steps:
# - uses: actions/checkout@v2
#
# - uses: r-lib/actions/setup-r@master
#
# - uses: r-lib/actions/setup-pandoc@master
#
# - name: Query dependencies
# run: |
# install.packages('remotes')
# saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
# writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
# shell: Rscript {0}
#
# - name: Cache R packages
# uses: actions/cache@v2
# with:
# path: ${{ env.R_LIBS_USER }}
# key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
# restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
#
# - name: Install system dependencies
# run: |
# while read -r cmd
# do
# eval sudo $cmd
# done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
# - name: Install dependencies
# run: |
# install.packages(c("remotes"))
# remotes::install_deps(dependencies = TRUE)
# remotes::install_cran("covr")
# shell: Rscript {0}
#
# - name: Test coverage
# run: covr::codecov()
# shell: Rscript {0}
on:
push:
branches:
- master
pull_request:
branches:
- master

name: test-coverage

jobs:
test-coverage:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@master

- uses: r-lib/actions/setup-pandoc@master

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}

- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
install.packages(c("remotes"))
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("covr")
shell: Rscript {0}

- name: Test coverage
run: covr::codecov()
shell: Rscript {0}

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