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146 Open 109 Closed
146 Open 109 Closed
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Issues list

Using only .snap file from publication for SnapATAC analysis
#260 opened Jan 31, 2024 by Jasminefighter
createGmatFromMat ERROR
#258 opened Jan 12, 2024 by gengbaobao
2
'CEMBA180305_2B.snap' no snap object in "Integrative Analysis of 10X and snATAC"
#257 opened Jan 2, 2024 by aminbensaad
snapRbind uses defunct function rBind
#255 opened Apr 27, 2023 by imran-aifi
Troubles with homer findknownmotifs.pl
#254 opened Feb 16, 2023 by sanjanabhatnagar
Troubles while creating snap file with bam
#253 opened Nov 19, 2022 by HieuNg1598
Can we determ the chromatin accessibility for one single cell?
#252 opened Oct 27, 2022 by biozzq
Merging multiple fragment samples
#251 opened Sep 18, 2022 by seoyeonoh12
Transitioning from v1 to v2 SnapATAC
#249 opened Jul 29, 2022 by mej54
snaptools for plant genome
#248 opened Jun 19, 2022 by 304243504
failed to read alignments from BAM
#247 opened Jun 2, 2022 by kunalkathuria
2
converting signac object to snap atac
#246 opened May 8, 2022 by hamidsta
General package installation/download difficulty - especially interopability with seurat
#245 opened Apr 21, 2022 by BradleyH017
[Error: Cholmod error 'problem too large']: when integrating multiple matrix using snapRbind function
#244 opened Mar 16, 2022 by murphchuyi
1
GM and PM not found by snapAtac
#243 opened Mar 8, 2022 by rLannes
1
Error in calGmatFromMat()
#242 opened Jan 29, 2022 by swttalyan
gencode.vM16.gene.bed download
#241 opened Jan 10, 2022 by linhch5
error In runKNN（）
#240 opened Dec 9, 2021 by 1221li
Installation issues
#238 opened Nov 20, 2021 by darlene003
4
runEigDecomp function results in NaN
#237 opened Oct 22, 2021 by marvinquiet
The documents in http://renlab.sdsc.edu/r3fang/share/Fang_2019/MOs_snATAC can't be downloaded. The links aren't accessible
#235 opened Aug 20, 2021 by ifyouaresober
2
Error" 'rBind' is defunct.
#234 opened Jul 13, 2021 by AndresLugoCas
5
Update the Snapatac
#233 opened Jul 10, 2021 by tzhu-bio
i cannot import phenograph because of this
#232 opened Jul 4, 2021 by vinu2004
Analyzing multiple samples with separate barcode information
#231 opened Jun 7, 2021 by Xinyi371
ProTip! What’s not been updated in a month: updated:<2024-11-19.