update data

raimondilab · Sep 27, 2024 · e0421c2 · e0421c2
1 parent a07893c
commit e0421c2
Show file tree

Hide file tree

Showing 9 changed files with 6 additions and 0 deletions.
diff --git a/data/PDB/allPDB.fasta b/data/PDB/allPDB.fasta
@@ -1360,6 +1360,8 @@ SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNKWTLGQVTCDLFI
 ILYAVFGFGAVLAVCGNLLVMTSILHFRQLHSPANFLVASLACADFLVGVMVMPFSMVRSVEGCWYFGDSYCKLHTCFDVSFCYCSLFHLCFISVDRYIAVSDPLAYPTRFTASVSGKCITFSWLLSISYGFSLIYGGCQIAVNQTWVFINFSVFLIPTLVMITVYSKIFLIAKQQAQNIEKMSKDRVAKRERKAAKTLGIAVAAFLLSWLPYFIDSFIDAFLGFITPTYVYEILVWIVYYNSAMNPLIYAFFYPWFRKAI
 >8pok|A
 DSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNESKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGX
+>8qj2|A
+GCYEQLFVSPEVFVTLGVISLLENILVIVAIAKNLHSPMYFFICSLAVADMLVSVSNGSETIVITLNIDNVIDSVICSSLLASICSLLSIAVDRYFTIFYALQYHNIMTVKRVGIIISCIWAACTVSGILFIIYSDSSAVIICLITMFFTMLALMASLYVHMFLMARLHIKRINMKGAITLTILIGVFVVCWAPFFLHLIFYISCPQNPYCVCFMSHFNLYLILIMCNSIIDPLIYALRSQELRKT
 >8sai|A
 MDEKLLSTVLTTSYSVIFIVGLVGNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRKAITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTMCFHYRDKHNAKGEAIFNFILVVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSQLNVSSCYWKEIVHKTNEIMLVLSSFNSCLDPVMYFLMSSNIRKIMX
 >8sg1|R
@@ -1578,6 +1580,8 @@ ALNITPEQFSRLLRDHNLTREQFIALYRLRPLVYTPELPGRAKLALVLTGVLIFALALFGNALVFYVVTRSKAMRTVTNI
 AWLVPLFFAALMLLGLVGNSLVIYVICRHKPMRTVTNFYIANLAATDVTFLLCCVPFTALLYPLPGWVLGDFMCKFVNYIQQVSVQATCWTLTAMSVDRWYVTVFPLRALHRRTPRLALAVSLSIWVGSAAVSAPVLALHRLSPGPRAYCSEAFPSRALERAFALYNLLALYLLPLLATCACYAAMLRHLGRVSALQGQVLAERAGAVRAKVSRLVAAVVLLFAACWGPIQLFLVLQALGPWHPRSYAAYALKTWAHCMSYSNSALNPLLYAFLGSHFRQAFRRV
 >8zje|R
 AWLVPLFFAALMLLGLVGNSLVIYVICMRTVTNFYIANLAATDVTFLLCCVPFTALLYPLPGWVLGDFMCKFVNYIQQVSVQATCWTLTAMSVDRWYVTVFPLRALHRRTPRLALAVSLSIWVGSAAVSAPVLALHRLSPYCSEAFPSRALERAFALYNLLALYLLPLLATCACYAAMLRHLGRVPADSALQGQVLAERAGAVRAKVSRLVAAVVLLFAACWGPIQLFLVLQALGPWHPRSYAAYALKTWAHCMSYSNSALNPLLYAFLGSHFRQAFRR
+>8zqe|R
+FLPVFYTAVFLTGVLGNLVLMGALHFKPGSRRLIDIFIINLAASDFIFLVTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLAIVWPVVSRKFRRTDCAYVVCASIWFISCLLGLPTLLSRELTLIDDKPYCAEKKATPIKLIWSLVALIFTFFVPLLSIVTCYCCIARKLCAHYQQSGKHNKKLKKSIKIIFIVVAAFLVSWLPFNTFKFLAIVSGLRQSAILQLGMEVSGPLAFANSCVNPFIYYIFDSYIRRAIVH
 >8zr5|C
 SFGVILAVLASLIIATNTLVAVAVLLLIHKNDGVSLCFTLNLAVADTLIGVAISGLLTDQLSSPSRPTQKTLCSLRMAFVTSSAAASVLTVMLITFDRYLAIKQPFRYLKIMSGFVAGACIAGLWLVSYLIGFLPLGIPMFQQTAYKGQCSFFAVFHPHFVLTLSCVGFFPAMLLFVFFYCDMLKIASMHSQQIRKMEHAGAMAGDFKALRTVSVLIGSFALSWTPFLITGIVQVACQECHLYLVLERYLWLLGVGNSLLNPLIYAYWQKEVRLQLYHMALGVK
 >8zrk|R

diff --git a/data/PDB/blastdb/allPDB.pdb b/data/PDB/blastdb/allPDB.pdb
diff --git a/data/PDB/blastdb/allPDB.phr b/data/PDB/blastdb/allPDB.phr
diff --git a/data/PDB/blastdb/allPDB.pin b/data/PDB/blastdb/allPDB.pin
diff --git a/data/PDB/blastdb/allPDB.pot b/data/PDB/blastdb/allPDB.pot
diff --git a/data/PDB/blastdb/allPDB.psq b/data/PDB/blastdb/allPDB.psq
diff --git a/data/PDB/blastdb/allPDB.pto b/data/PDB/blastdb/allPDB.pto
diff --git a/data/PDB/pdblist.txt b/data/PDB/pdblist.txt
@@ -679,6 +679,7 @@
 8pkm R A -
 8pm2 R A -
 8pok A B -
+8qj2 A B -
 8sai A D -
 8sg1 R A -
 8smv R A -
@@ -788,6 +789,7 @@
 8zh8 R A -
 8zjd R A -
 8zje R A -
+8zqe R A -
 8zr5 C A -
 8zrk R A -
 9asb R A -

diff --git a/data/SIFTS/pdb_chain_pfam.tsv.gz b/data/SIFTS/pdb_chain_pfam.tsv.gz