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# <div align="left"><img src="https://rapids.ai/assets/images/rapids_logo.png" width="90px"/> cuCIM</div> | ||
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[RAPIDS](https://rapids.ai) cuCIM is an open-source, accelerated computer vision and image processing software library for multidimensional images used in biomedical, geospatial, material and life science, and remote sensing use cases. | ||
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cuCIM offers: | ||
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- Enhanced Image Processing Capabilities for large and n-dimensional tag image file format (TIFF) files | ||
- Accelerated performance through Graphics Processing Unit (GPU)-based image processing and computer vision primitives | ||
- A Straightforward Pythonic Interface with Matching Application Programming Interface (API) for Openslide | ||
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cuCIM supports the following formats: | ||
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- Aperio ScanScope Virtual Slide (SVS) | ||
- Philips TIFF | ||
- Generic Tiled, Multi-resolution RGB TIFF files with the following compression schemes: | ||
- No Compression | ||
- JPEG | ||
- JPEG2000 | ||
- Lempel-Ziv-Welch (LZW) | ||
- Deflate | ||
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**NOTE:** For the latest stable [README.md](https://github.com/rapidsai/cucim/blob/main/README.md) ensure you are on the `main` branch. | ||
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- [GTC 2022 Accelerating Storage IO to GPUs with Magnum IO [S41347]](https://events.rainfocus.com/widget/nvidia/gtcspring2022/sessioncatalog/session/1634960000577001Etxp) | ||
- cuCIM's GDS API examples: <https://github.com/NVIDIA/MagnumIO/tree/main/gds/readers/cucim-gds> | ||
- [SciPy 2021 cuCIM - A GPU image I/O and processing library](https://www.scipy2021.scipy.org/) | ||
- [video](https://youtu.be/G46kOOM9xbQ) | ||
- [GTC 2021 cuCIM: A GPU Image I/O and Processing Toolkit [S32194]](https://www.nvidia.com/en-us/on-demand/search/?facet.mimetype[]=event%20session&layout=list&page=1&q=cucim&sort=date) | ||
- [video](https://www.nvidia.com/en-us/on-demand/session/gtcspring21-s32194/) | ||
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**[Developer Page](https://developer.nvidia.com/multidimensional-image-processing)** | ||
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**Blogs** | ||
- [Enhanced Image Analysis with Multidimensional Image Processing](https://developer.nvidia.com/blog/enhanced-image-analysis-with-multidimensional-image-processing/) | ||
- [Accelerating Scikit-Image API with cuCIM: n-Dimensional Image Processing and IO on GPUs](https://developer.nvidia.com/blog/cucim-rapid-n-dimensional-image-processing-and-i-o-on-gpus/) | ||
- [Accelerating Digital Pathology Pipelines with NVIDIA Clara™ Deploy](https://developer.nvidia.com/blog/accelerating-digital-pathology-pipelines-with-nvidia-clara-deploy-2/) | ||
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**Webinars** | ||
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- [cuCIM: a GPU Image IO and Processing Library](https://www.youtube.com/watch?v=G46kOOM9xbQ) | ||
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**[Documentation](https://docs.rapids.ai/api/cucim/stable)** | ||
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**Release notes** are available on our [wiki page](https://github.com/rapidsai/cucim/wiki/Release-Notes). | ||
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## Install cuCIM | ||
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### Conda | ||
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#### [Conda (stable)](https://anaconda.org/rapidsai/cucim) | ||
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> conda create -n cucim -c rapidsai -c conda-forge cucim cudatoolkit=`<CUDA version>` | ||
`<CUDA version>` should be 11.0+ (e.g., `11.0`, `11.2`, etc.) | ||
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#### [Conda (nightlies)](https://anaconda.org/rapidsai-nightly/cucim) | ||
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> conda create -n cucim -c rapidsai-nightly -c conda-forge cucim cudatoolkit=`<CUDA version>` | ||
`<CUDA version>` should be 11.0+ (e.g., `11.0`, `11.2`, etc) | ||
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### [PyPI](https://pypi.org/project/cucim/) | ||
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```bash | ||
pip install cucim | ||
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# Install dependencies for `cucim.skimage` (assuming that CUDA 11.0 is used for CuPy) | ||
pip install scipy scikit-image cupy-cuda110 | ||
``` | ||
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### Notebooks | ||
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Please check out our [Welcome](notebooks/Welcome.ipynb) notebook ([NBViewer](https://nbviewer.jupyter.org/github/rapidsai/cucim/blob/branch-22.10/notebooks/Welcome.ipynb)) | ||
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#### Downloading sample images | ||
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To download images used in the notebooks, please execute the following commands from the repository root folder to copy sample input images into `notebooks/input` folder: | ||
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(You will need [Docker](https://www.docker.com/) installed in your system) | ||
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```bash | ||
./run download_testdata | ||
``` | ||
or | ||
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```bash | ||
mkdir -p notebooks/input | ||
tmp_id=$(docker create gigony/svs-testdata:little-big) | ||
docker cp $tmp_id:/input notebooks | ||
docker rm -v ${tmp_id} | ||
``` | ||
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## Build/Install from Source | ||
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See build [instructions](CONTRIBUTING.md#setting-up-your-build-environment). | ||
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## Contributing Guide | ||
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Contributions to cuCIM are more than welcome! | ||
Please review the [CONTRIBUTING.md](https://github.com/rapidsai/cucim/blob/main/CONTRIBUTING.md) file for information on how to contribute code and issues to the project. | ||
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## Acknowledgments | ||
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Without awesome third-party open source software, this project wouldn't exist. | ||
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Please find [LICENSE-3rdparty.md](LICENSE-3rdparty.md) to see which third-party open source software | ||
is used in this project. | ||
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## License | ||
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Apache-2.0 License (see [LICENSE](LICENSE) file). | ||
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Copyright (c) 2020-2022, NVIDIA CORPORATION. |