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Reactome

A curated pathway database

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  1. reactome2py reactome2py Public

    python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

    Python 28 9

  2. ReactomeGSA ReactomeGSA Public

    R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

    R 22 4

  3. graph-core graph-core Public

    Models the Reactome knowledgebase into a interconnected graph

    Java 17 7

  4. pwp-browser pwp-browser Public

    A tool for visualising and interacting with pathways data

    Java 10 7

  5. container container Public

    🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

    Perl 9 4

  6. content-service content-service Public

    The new Reactome REST API to access the data

    Java 9 5

Repositories

Showing 10 of 128 repositories
  • release-download-directory Public

    Data-release-pipeline: Generation of files for the Reactome website download directory

    reactome/release-download-directory’s past year of commit activity
    Java 0 1 10 1 Updated Jan 22, 2025
  • release-jenkins-utils Public

    Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

    reactome/release-jenkins-utils’s past year of commit activity
    Groovy 0 1 5 0 Updated Jan 22, 2025
  • sbml-exporter Public
    reactome/sbml-exporter’s past year of commit activity
    Java 0 1 0 0 Updated Jan 22, 2025
  • fireworks-layout Public

    Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

    reactome/fireworks-layout’s past year of commit activity
    Java 1 3 1 0 Updated Jan 22, 2025
  • diagram-converter Public

    Generates a set of JSON files to be consumed by the Diagram Viewer

    reactome/diagram-converter’s past year of commit activity
    Java 1 3 0 0 Updated Jan 22, 2025
  • statistics-generator Public

    Cypher queries to generate automatically release statistics

    reactome/statistics-generator’s past year of commit activity
    R 1 MIT 0 2 0 Updated Jan 22, 2025
  • reactome/PathwayBrowser’s past year of commit activity
    TypeScript 0 0 0 0 Updated Jan 22, 2025
  • release-biomodels Public

    Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances

    reactome/release-biomodels’s past year of commit activity
    Java 0 1 2 0 Updated Jan 22, 2025
  • reactome_chatbot Public

    This is Reactomes chatbot to its database and search index

    reactome/reactome_chatbot’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jan 22, 2025
  • server-java-utils Public

    Server side utilities shared across different projects

    reactome/server-java-utils’s past year of commit activity
    Java 0 2 0 0 Updated Jan 22, 2025