Preparations for pypi

.github/workflows/auto_release.yml

@@ -0,0 +1,17 @@
+name: "tagged-release"
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  tagged-release:
+    name: "Tagged Release"
+    runs-on: "ubuntu-latest"
+
+    steps:
+      - uses: "marvinpinto/action-automatic-releases@latest"
+        with:
+          repo_token: "${{ secrets.GITHUB_TOKEN }}"
+          prerelease: false

README.md

@@ -4,7 +4,6 @@
 [![PyPI](https://img.shields.io/pypi/v/napari-trackpy.svg?color=green)](https://pypi.org/project/napari-trackpy)
 [![Python Version](https://img.shields.io/pypi/pyversions/napari-trackpy.svg?color=green)](https://python.org)
 [![tests](https://github.com/rhoitink/napari-trackpy/workflows/tests/badge.svg)](https://github.com/rhoitink/napari-trackpy/actions)
-[![codecov](https://codecov.io/gh/rhoitink/napari-trackpy/branch/main/graph/badge.svg)](https://codecov.io/gh/rhoitink/napari-trackpy)
 [![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-trackpy)](https://napari-hub.org/plugins/napari-trackpy)
 
 Plugin to do [trackpy] particle tracking on 3D microscopy data within [napari]. Currently only tracking of XYZ data is implemented.
@@ -28,8 +27,7 @@ To install latest development version :
 
 ## Contributing
 
-Contributions are very welcome. Tests can be run with [tox], please ensure
-the coverage at least stays the same before you submit a pull request.
+Contributions are very welcome. Tests can be run with [tox].
 
 ## License
 

setup.cfg

@@ -36,6 +36,7 @@ install_requires =
     qtpy
     napari
     napari-aicsimageio
+    readlif
     trackpy
     matplotlib
 

src/napari_trackpy/_widget.py

@@ -101,7 +101,6 @@ def do_particle_tracking(self) -> None:
         """Thread that performs the particle tracking"""
         img = self.img_layer.metadata["aicsimage"]
 
-        # tracking code implementation based on `sp8_xyz_tracking_lif.py` by Maarten Bransen
         stack = np.squeeze(
             self.img_layer.data_raw
         )  # squeeze out dimensions with length 1