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fixes bug in compareEstimates with median estimates #39

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Jun 4, 2024
Merged

fixes bug in compareEstimates with median estimates #39

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14 changes: 10 additions & 4 deletions R/smoothArea.R
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Original file line number Diff line number Diff line change
Expand Up @@ -426,6 +426,7 @@ plot.svysae <- function(x, return_list = F, plot.factor = NULL, ...) {
#'
#' @param x svysae object. Plots are created for all models in this object.
#' @param posterior.sample Matrix of posteriors samples of area level quantities with one row for each area and one column for each sample. This argument may be specified to only provide a heatmap for the desired samples.
#' @param title Optional parameter changing the title of the plot
#'
#' @return ggplot containing heat map of pairwise comparisons
#'
Expand All @@ -452,7 +453,8 @@ plot.svysae <- function(x, return_list = F, plot.factor = NULL, ...) {
#' compareEstimates(cts.res)
#' }
compareEstimates <- function(x,
posterior.sample = NULL) {
posterior.sample = NULL,
title = NULL) {


x_att <- attributes(x)
Expand Down Expand Up @@ -488,7 +490,7 @@ compareEstimates <- function(x,
Domain1 = x_att$domain.names[median_order],
Domain2 = "Median",
Prob = NA,
est = domain_medians
est = domain_medians[median_order]

)
extra_cols <- c("", "Median", "Interval")
Expand Down Expand Up @@ -525,9 +527,13 @@ compareEstimates <- function(x,
ggplot2::scale_fill_viridis_c(name = "Probability of Domain 1 > Domain 2",
na.value = "white") +
ggplot2::scale_color_manual(values = c("white", "black"), guide = "none") +
ggplot2::labs(title = x_att$inla.fitted[i],
x = "Domain 2",
ggplot2::labs(x = "Domain 2",
y = "Domain 1")
if (!is.null(title)) {
g_heat <- g_heat + ggplot2::labs(title = title)
} else if (is.null(posterior.sample)) {
g_heat <- g_heat + ggplot2::labs(title = x_att$inla.fitted[i])
}
suppressWarnings(print(g_heat))
}
}
Expand Down
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