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@rmjarvis
rmjarvis committed Feb 10, 2023
1 parent 80e9666 commit 7037893
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6 changes: 6 additions & 0 deletions docs/_build/html/_modules/treecorr/binnedcorr2.html
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Expand Up @@ -644,6 +644,12 @@ <h1>Source code for treecorr.binnedcorr2</h1><div class="highlight"><pre>
<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">_d2</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span> <span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_ro</span><span class="o">.</span><span class="n">_d2</span>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">cov</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">estimate_cov</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">var_method</span><span class="p">)</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_cov</span>

<span class="k">def</span> <span class="nf">__getstate__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="n">d</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="vm">__dict__</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
<span class="n">d</span><span class="o">.</span><span class="n">pop</span><span class="p">(</span><span class="s1">&#39;_corr&#39;</span><span class="p">,</span><span class="kc">None</span><span class="p">)</span>
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38 changes: 28 additions & 10 deletions docs/_build/html/_modules/treecorr/ggcorrelation.html
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20 changes: 15 additions & 5 deletions docs/_build/html/_modules/treecorr/kgcorrelation.html
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Expand Up @@ -189,11 +189,13 @@ <h1>Source code for treecorr.kgcorrelation</h1><div class="highlight"><pre>
<span class="bp">self</span><span class="o">.</span><span class="n">_ro</span><span class="o">.</span><span class="n">_d2</span> <span class="o">=</span> <span class="mi">3</span> <span class="c1"># GData</span>
<span class="bp">self</span><span class="o">.</span><span class="n">xi</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">xi_im</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">varxi</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">meanr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">meanlogr</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">weight</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">npairs</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_var_num</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">debug</span><span class="p">(</span><span class="s1">&#39;Finished building KGCorr&#39;</span><span class="p">)</span></div>

<span class="nd">@property</span>
Expand Down Expand Up @@ -377,9 +379,15 @@ <h1>Source code for treecorr.kgcorrelation</h1><div class="highlight"><pre>
<span class="sd"> varg (float): The shear variance per component for the second field.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_finalize</span><span class="p">()</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_var_num</span> <span class="o">=</span> <span class="n">vark</span> <span class="o">*</span> <span class="n">varg</span>
<span class="bp">self</span><span class="o">.</span><span class="n">cov</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">estimate_cov</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">var_method</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">varxi</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[:]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">diagonal</span><span class="p">()</span></div>
<span class="bp">self</span><span class="o">.</span><span class="n">_var_num</span> <span class="o">=</span> <span class="n">vark</span> <span class="o">*</span> <span class="n">varg</span></div>

<span class="nd">@property</span>
<span class="k">def</span> <span class="nf">varxi</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros_like</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">rnom</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">float</span><span class="p">)</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">_var_num</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[:]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">cov</span><span class="o">.</span><span class="n">diagonal</span><span class="p">()</span>
<span class="k">return</span> <span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span>

<span class="k">def</span> <span class="nf">_clear</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Clear the data vectors</span>
Expand All @@ -390,6 +398,8 @@ <h1>Source code for treecorr.kgcorrelation</h1><div class="highlight"><pre>
<span class="bp">self</span><span class="o">.</span><span class="n">meanlogr</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[:]</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">weight</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[:]</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">npairs</span><span class="o">.</span><span class="n">ravel</span><span class="p">()[:]</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_cov</span> <span class="o">=</span> <span class="kc">None</span>

<div class="viewcode-block" id="KGCorrelation.__iadd__"><a class="viewcode-back" href="../../kg.html#treecorr.KGCorrelation.__iadd__">[docs]</a> <span class="k">def</span> <span class="fm">__iadd__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">other</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;Add a second `KGCorrelation`&#39;s data to this one.</span>
Expand Down Expand Up @@ -566,7 +576,7 @@ <h1>Source code for treecorr.kgcorrelation</h1><div class="highlight"><pre>
<span class="bp">self</span><span class="o">.</span><span class="n">meanlogr</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;meanlogr&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">xi</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;kgamT&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">xi_im</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;kgamX&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">varxi</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;sigma&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span><span class="o">**</span><span class="mi">2</span>
<span class="bp">self</span><span class="o">.</span><span class="n">_varxi</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;sigma&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span><span class="o">**</span><span class="mi">2</span>
<span class="bp">self</span><span class="o">.</span><span class="n">weight</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;weight&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">npairs</span> <span class="o">=</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;npairs&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">reshape</span><span class="p">(</span><span class="n">s</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">coords</span> <span class="o">=</span> <span class="n">params</span><span class="p">[</span><span class="s1">&#39;coords&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
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