vignette links

README.Rmd

@@ -138,7 +138,7 @@ start using them.
 ## Getting started for new users
 
 To get started with `{rix}` and Nix, you should read the following vignette
-`vignette("1-getting_started")`. The vignettes are numbered to get you to learn
+`vignette("1-getting-started")`. The vignettes are numbered to get you to learn
 how to use `{rix}` and Nix smoothly. There’s a lot of info, so take your time
 reading the vignettes. Don’t hesitate to open an issue if something is not
 clear.

dev/1-getting_started.Rmd

@@ -73,7 +73,7 @@ This `default.nix` can in turn be used by Nix to build an environment containing
 the latest version of R, with the `{dplyr}` and `{chronicler}` packages.
 
 Take note of the `ide = "other"` argument: this argument, and the values it
-can take, are further discussed in the vignette `vignette("5-interactive_use")`
+can take, are further discussed in the vignette `vignette("5-interactive-use")`
 but continue reading this vignette and then vignettes numbered by a "4".
 
 ### Using default.nix files

dev/2b-macos.Rmd

@@ -125,9 +125,10 @@ on macOS. When you try to generate an expression with `ide =
   version of R for reproducibility purposes;
 - use subshells to execute only the code you need to run in a specific
   environment. See this vignette `vignette("advanced-topic-running-r-or-shell-code-in-nix-from-r")`;
+
 - help us package RStudio for macOS on `nixpgs`. See
-  [https://github.com/NixOS/nixpkgs/blob/master/pkgs/applications/editors/rstudio/default.nix](the
-  expression for RStudio).
+  [here](https://github.com/NixOS/nixpkgs/blob/master/pkgs/applications/editors/rstudio/default.nix),
+  the Nix expression for RStudio.
 
 We recommend you continue with the next vignette before tackling the more advanced
 topics listed above: `vignette("3-using-rix-to-build-project-specific-environments")`.

dev/3-building_envs_with_rix.Rmd

@@ -14,15 +14,15 @@ The ideal workflow when using `{rix}` is to create a new, separate environment
 at the start of a project. Let's say that you wish to analyse some data set, and
 need `{dplyr}` and `{ggplot2}`. Let's also suppose that you use VS Code as your
 IDE (there will be more discussion on editors in the vignette
-`vignette("5-interactive_use")` but for now, let’s assume that you use VS Code).
+`vignette("5-interactive-use")` but for now, let’s assume that you use VS Code).
 With the `rix::rix()` function, you can easily generate the right `default.nix`
 file. You need to provide the following inputs to `rix()`:
 
 - `r_ver`: the version of R required. Use "latest" for the latest version;
 - `r_pkgs`: the required R packages. For example "dplyr" (more on this in the vignette `vignette("4a-installing-r-packages-in-a-nix-environment")`);
 - `system_pkgs`: the required system packages, if needed. For example "quarto", or a Python interpreter (more on this in the vignette `vignette("4b-installing-system-tools-and-texlive-packages-in-a-nix-environment")`);
 - `git_pkgs`: list of git packages to add (more on this in the vignette `vignette("4a-installing-r-packages-in-a-nix-environment")`);
-- `ide`: the integrated development editor to use (more on this in the vignette `vignette("5-interactive_use")`)
+- `ide`: the integrated development editor to use (more on this in the vignette `vignette("5-interactive-use")`)
 - `path`: the path where to save the `default.nix` file.
 - `overwrite`: whether to overwrite the `default.nix` file or not.
 - `print`: whether to print the `default.nix` file to the console or not.
@@ -68,7 +68,7 @@ nix-shell
 This will activate the environment. If you have VS Code installed you can
 start it from this environment and VS Code will use this specific R version
 library of packages. We will explore this in greater detail in the vignette
-`vignette("5-interactive_use")`.
+`vignette("5-interactive-use")`.
 
 ## Running old projects with {rix}
 

dev/4b-install_sys_pkgs.Rmd

@@ -91,4 +91,4 @@ literate programming, refer to the vignette
 Environments built with Nix are not completely cut off from the rest of your
 system, and as such, you should be able to use your usual IDE to interact with
 Nix environments. The only exception is RStudio. Everything will be explained in
-greater detail in the vignette `vignette("5-interactive_use")`.
+greater detail in the vignette `vignette("5-interactive-use")`.

vignettes/1-getting-started.Rmd

@@ -88,7 +88,7 @@ This `default.nix` can in turn be used by Nix to build an environment containing
 the latest version of R, with the `{dplyr}` and `{chronicler}` packages.
 
 Take note of the `ide = "other"` argument: this argument, and the values it
-can take, are further discussed in the vignette `vignette("5-interactive_use")`
+can take, are further discussed in the vignette `vignette("5-interactive-use")`
 but continue reading this vignette and then vignettes numbered by a "4".