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napari-quoll

License PyPI Python Version tests codecov napari hub

Resolution estimation for electron tomography

The Python package which does the resolution estimation is Quoll. This repository, napari-quoll is just the Napari plugin.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-quoll via pip, replacing <env_name> with an environment name of your choice:

conda -n create <env_name> pip
conda activate <env_name>
pip install napari-quoll

(if napari isn't installed yet)
pip install napari[all]

(and because of some dependency issues, though this will be fixed in the future)
pip install imageio-ffmpeg

To install latest development version :

pip install git+https://github.com/rosalindfranklininstitute/napari-quoll.git

followed by pip installing napari[all], imageio-ffmpeg if not already present.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the Apache Software License 2.0 license, "napari-quoll" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

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Napari plugin for resolution measurement of EM images

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