Merge pull request #114 from rseng/update/analysis-2024-03-27

Update from update/analysis-2024-03-27

_data/language_counts.json

@@ -1,16 +1,16 @@
 {
     "unknown": 176,
-    "Python": 2197,
-    "Jupyter Notebook": 442,
+    "Python": 2207,
+    "Jupyter Notebook": 443,
     "Modelica": 1,
     "Shell": 31,
     "HTML": 92,
     "Perl": 48,
-    "R": 661,
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     "C++": 562,
-    "Java": 102,
-    "C": 329,
-    "Rust": 32,
+    "Java": 103,
+    "C": 330,
+    "Rust": 33,
     "JavaScript": 84,
     "AMPL": 1,
     "MATLAB": 41,
@@ -19,7 +19,7 @@
     "Clojure": 4,
     "Groovy": 6,
     "E": 1,
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+    "Julia": 84,
     "null": 16,
     "Matlab": 10,
     "Scala": 8,

_data/repos.json

@@ -19707,7 +19707,67 @@
             "tracking",
             "yolo"
         ],
-        "github/EddyRivasLab/infernal": []
+        "github/EddyRivasLab/infernal": [],
+        "github/JuliaAI/Imbalance.jl": [
+            "class-imbalance",
+            "classification",
+            "machine-learning"
+        ],
+        "github/Junwu302/HiFun": [],
+        "github/etiennepayet/nti": [],
+        "github/alejandroaviles/fkpt": [],
+        "github/suneeshjacob/ACRoD": [],
+        "github/uw-comphys/shapelets": [],
+        "github/firedrakeproject/checkpoint_schedules": [],
+        "github/wwood/kingfisher-download": [
+            "sra",
+            "aspera-client",
+            "fastq-files"
+        ],
+        "github/frank1010111/pywaterflood": [
+            "python",
+            "petroleum-engineering",
+            "reservoir",
+            "rust"
+        ],
+        "github/CompGenomeLab/boquila": [],
+        "github/UTEL-UIUC/gtfs_segments": [
+            "bus",
+            "stop",
+            "distribution",
+            "gtfs-feed",
+            "python",
+            "transit",
+            "transit-data"
+        ],
+        "github/nabeelre/BTSbot": [
+            "astronomy",
+            "astrophysics",
+            "computer-vision",
+            "time-domain-astronomy",
+            "transient-astronomy",
+            "ztf"
+        ],
+        "github/MedMaxLab/selfEEG": [
+            "deep-learning",
+            "eeg",
+            "self-supervised-learning"
+        ],
+        "github/Open-Minds-Lab/MRdataset": [
+            "neuroimaging",
+            "mri",
+            "neuroscience",
+            "quality-control",
+            "niqc"
+        ],
+        "github/ahudde/greeks": [
+            "option",
+            "greeks",
+            "asian-option",
+            "r-package",
+            "implied-volatility"
+        ],
+        "github/Jashcraf/poke": []
     },
     "language": {
         "gitlab/chiemotono/mdcontactcom": "unknown",
@@ -25099,7 +25159,23 @@
         "github/songweizhi/Binning_refiner": "Python",
         "github/seamplex/feenox": "C",
         "github/FabianPlum/OmniTrax": "Python",
-        "github/EddyRivasLab/infernal": "C"
+        "github/EddyRivasLab/infernal": "C",
+        "github/JuliaAI/Imbalance.jl": "Julia",
+        "github/Junwu302/HiFun": "Python",
+        "github/etiennepayet/nti": "Java",
+        "github/alejandroaviles/fkpt": "C",
+        "github/suneeshjacob/ACRoD": "Python",
+        "github/uw-comphys/shapelets": "Python",
+        "github/firedrakeproject/checkpoint_schedules": "Python",
+        "github/wwood/kingfisher-download": "Python",
+        "github/frank1010111/pywaterflood": "Python",
+        "github/CompGenomeLab/boquila": "Rust",
+        "github/UTEL-UIUC/gtfs_segments": "Python",
+        "github/nabeelre/BTSbot": "Python",
+        "github/MedMaxLab/selfEEG": "Python",
+        "github/Open-Minds-Lab/MRdataset": "Python",
+        "github/ahudde/greeks": "R",
+        "github/Jashcraf/poke": "Jupyter Notebook"
     },
     "url": {
         "gitlab/chiemotono/mdcontactcom": "https://gitlab.com/chiemotono/mdcontactcom",
@@ -30491,7 +30567,23 @@
         "github/songweizhi/Binning_refiner": "https://github.com/songweizhi/Binning_refiner",
         "github/seamplex/feenox": "https://github.com/seamplex/feenox",
         "github/FabianPlum/OmniTrax": "https://github.com/FabianPlum/OmniTrax",
-        "github/EddyRivasLab/infernal": "https://github.com/EddyRivasLab/infernal"
+        "github/EddyRivasLab/infernal": "https://github.com/EddyRivasLab/infernal",
+        "github/JuliaAI/Imbalance.jl": "https://github.com/JuliaAI/Imbalance.jl",
+        "github/Junwu302/HiFun": "https://github.com/Junwu302/HiFun",
+        "github/etiennepayet/nti": "https://github.com/etiennepayet/nti",
+        "github/alejandroaviles/fkpt": "https://github.com/alejandroaviles/fkpt",
+        "github/suneeshjacob/ACRoD": "https://github.com/suneeshjacob/ACRoD",
+        "github/uw-comphys/shapelets": "https://github.com/uw-comphys/shapelets",
+        "github/firedrakeproject/checkpoint_schedules": "https://github.com/firedrakeproject/checkpoint_schedules",
+        "github/wwood/kingfisher-download": "https://github.com/wwood/kingfisher-download",
+        "github/frank1010111/pywaterflood": "https://github.com/frank1010111/pywaterflood",
+        "github/CompGenomeLab/boquila": "https://github.com/CompGenomeLab/boquila",
+        "github/UTEL-UIUC/gtfs_segments": "https://github.com/UTEL-UIUC/gtfs_segments",
+        "github/nabeelre/BTSbot": "https://github.com/nabeelre/BTSbot",
+        "github/MedMaxLab/selfEEG": "https://github.com/MedMaxLab/selfEEG",
+        "github/Open-Minds-Lab/MRdataset": "https://github.com/Open-Minds-Lab/MRdataset",
+        "github/ahudde/greeks": "https://github.com/ahudde/greeks",
+        "github/Jashcraf/poke": "https://github.com/Jashcraf/poke"
     },
     "description": {
         "gitlab/chiemotono/mdcontactcom": "",
@@ -35883,6 +35975,22 @@
         "github/songweizhi/Binning_refiner": "Improving genome bins through the combination of different binning programs ",
         "github/seamplex/feenox": "Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool",
         "github/FabianPlum/OmniTrax": "Deep learning-driven multi animal tracking and pose estimation add-on for Blender",
-        "github/EddyRivasLab/infernal": "RNA secondary structure/sequence profiles for homology search and alignment"
+        "github/EddyRivasLab/infernal": "RNA secondary structure/sequence profiles for homology search and alignment",
+        "github/JuliaAI/Imbalance.jl": "A Julia toolbox with resampling methods to correct for class imbalance.",
+        "github/Junwu302/HiFun": "Homology Independent Protein Function prediction on Protein-Language Self-Attention Model",
+        "github/etiennepayet/nti": null,
+        "github/alejandroaviles/fkpt": "Perturbation theory with \"fk\"-Kernels",
+        "github/suneeshjacob/ACRoD": "Automatic Computation for Robot Design",
+        "github/uw-comphys/shapelets": "shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.",
+        "github/firedrakeproject/checkpoint_schedules": "Schedules for incremental checkpointing of adjoint simulations.",
+        "github/wwood/kingfisher-download": "Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.",
+        "github/frank1010111/pywaterflood": "Capacitance resistance models for waterflood connectivity",
+        "github/CompGenomeLab/boquila": "NGS read simulator to eliminate read nucleotide bias in sequence analysis.",
+        "github/UTEL-UIUC/gtfs_segments": "GTFS Segments: A fast and efficient library to generate bus stop spacings",
+        "github/nabeelre/BTSbot": "Automated identification of supernovae with multi-modal deep learning",
+        "github/MedMaxLab/selfEEG": "selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data",
+        "github/Open-Minds-Lab/MRdataset": "MRdataset : unified interface to various neuroimaging dataset formats",
+        "github/ahudde/greeks": "Sensitivities of Prices of Financial Options and Implied Volatilites",
+        "github/Jashcraf/poke": "Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python"
     }
 }

_data/repos_counts_languages.json

@@ -1,6 +1,6 @@
 {
-    "Python": 5964,
-    "R": 2235,
+    "Python": 5980,
+    "R": 2236,
     "Cpp": 441,
     "Js": 1691,
     "Go": 246

_data/stats.json

@@ -1,9 +1,9 @@
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-    "total_parsed": 2758
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 }

_repos/github/MedMaxLab/selfEEG/README.md

@@ -0,0 +1,103 @@
+---
+title: github/MedMaxLab/selfEEG
+layout: repo
+tipue_search_active: true
+exclude_from_search: true
+---
+# Software Credit
+
+|Manager|Name|Credit|
+|-------|----|------|
+|pypi|[torch](https://pytorch.org/)|0.176|
+|pypi|[pip](https://pip.pypa.io/)|0.141|
+|pypi|[numpy](https://www.numpy.org)|0.068|
+|pypi|[scipy](https://pypi.org/project/scipy)|0.044|
+|pypi|[pillow](https://pypi.org/project/pillow)|0.035|
+|pypi|[pytz](http://pythonhosted.org/pytz)|0.025|
+|pypi|[python-dateutil](https://github.com/dateutil/dateutil)|0.025|
+|pypi|[requests](https://pypi.org/project/requests)|0.019|
+|pypi|[colorama](https://pypi.org/project/colorama)|0.019|
+|pypi|[slack-sdk](https://pypi.org/project/slack-sdk)|0.018|
+|pypi|[ipywidgets](https://pypi.org/project/ipywidgets)|0.018|
+|pypi|[wheel](https://pypi.org/project/wheel)|0.018|
+|pypi|[twine](https://pypi.org/project/twine)|0.018|
+|pypi|[py-make](https://pypi.org/project/py-make)|0.018|
+|pypi|[importlib-resources](https://pypi.org/project/importlib-resources)|0.018|
+|pypi|[pytest](https://docs.pytest.org/en/latest/)|0.014|
+|pypi|[filelock](https://pypi.org/project/filelock)|0.011|
+|requirements.txt|github/MedMaxLab/selfEEG|0.01|
+|pypi|[pandas](https://pandas.pydata.org)|0.009|
+|pypi|[typing-extensions](https://pypi.org/project/typing-extensions)|0.008|
+|pypi|[black](https://github.com/psf/black)|0.008|
+|pypi|[optree](https://pypi.org/project/optree)|0.007|
+|pypi|[opt-einsum](https://pypi.org/project/opt-einsum)|0.007|
+|pypi|[triton](https://pypi.org/project/triton)|0.007|
+|pypi|[nvidia-nvtx-cu12](https://pypi.org/project/nvidia-nvtx-cu12)|0.007|
+|pypi|[nvidia-nccl-cu12](https://pypi.org/project/nvidia-nccl-cu12)|0.007|
+|pypi|[nvidia-cusparse-cu12](https://pypi.org/project/nvidia-cusparse-cu12)|0.007|
+|pypi|[nvidia-cusolver-cu12](https://pypi.org/project/nvidia-cusolver-cu12)|0.007|
+|pypi|[nvidia-curand-cu12](https://pypi.org/project/nvidia-curand-cu12)|0.007|
+|pypi|[nvidia-cufft-cu12](https://pypi.org/project/nvidia-cufft-cu12)|0.007|
+|pypi|[nvidia-cublas-cu12](https://pypi.org/project/nvidia-cublas-cu12)|0.007|
+|pypi|[nvidia-cudnn-cu12](https://pypi.org/project/nvidia-cudnn-cu12)|0.007|
+|pypi|[nvidia-cuda-cupti-cu12](https://pypi.org/project/nvidia-cuda-cupti-cu12)|0.007|
+|pypi|[nvidia-cuda-runtime-cu12](https://pypi.org/project/nvidia-cuda-runtime-cu12)|0.007|
+|pypi|[nvidia-cuda-nvrtc-cu12](https://pypi.org/project/nvidia-cuda-nvrtc-cu12)|0.007|
+|pypi|[fsspec](https://pypi.org/project/fsspec)|0.007|
+|pypi|[jinja2](https://pypi.org/project/jinja2)|0.007|
+|pypi|[networkx](https://pypi.org/project/networkx)|0.007|
+|pypi|[sympy](https://pypi.org/project/sympy)|0.007|
+|pypi|[flake8](https://pypi.org/project/flake8)|0.007|
+|pypi|[pytest-cov](https://pypi.org/project/pytest-cov)|0.007|
+|pypi|[sphinxext-opengraph](https://pypi.org/project/sphinxext-opengraph)|0.007|
+|pypi|[sphinx-prompt](https://pypi.org/project/sphinx-prompt)|0.007|
+|pypi|[Pillow](https://pypi.org/project/Pillow)|0.007|
+|pypi|[numpydoc](https://pypi.org/project/numpydoc)|0.007|
+|pypi|[sphinx-gallery](https://pypi.org/project/sphinx-gallery)|0.007|
+|pypi|[sphinx](https://pypi.org/project/sphinx)|0.007|
+|pypi|[seaborn](https://pypi.org/project/seaborn)|0.007|
+|pypi|[scikit-image](https://pypi.org/project/scikit-image)|0.007|
+|pypi|[memory-profiler](https://pypi.org/project/memory-profiler)|0.007|
+|pypi|[matplotlib](https://pypi.org/project/matplotlib)|0.007|
+|pypi|[threadpoolctl](https://pypi.org/project/threadpoolctl)|0.007|
+|pypi|[joblib](https://pypi.org/project/joblib)|0.007|
+|pypi|[psutil](https://pypi.org/project/psutil)|0.005|
+|pypi|[setproctitle](https://pypi.org/project/setproctitle)|0.004|
+|pypi|[pytest-forked](https://pypi.org/project/pytest-forked)|0.004|
+|pypi|[execnet](https://pypi.org/project/execnet)|0.004|
+|pypi|[attrs](https://pypi.org/project/attrs)|0.003|
+|pypi|[tomli](https://pypi.org/project/tomli)|0.003|
+|pypi|[hypothesis](https://hypothesis.works)|0.002|
+|pypi|[xmlschema](https://pypi.org/project/xmlschema)|0.002|
+|pypi|[setuptools](https://pypi.org/project/setuptools)|0.002|
+|pypi|[pygments](https://pypi.org/project/pygments)|0.002|
+|pypi|[mock](https://pypi.org/project/mock)|0.002|
+|pypi|[argcomplete](https://pypi.org/project/argcomplete)|0.002|
+|pypi|[exceptiongroup](https://pypi.org/project/exceptiongroup)|0.002|
+|pypi|[pluggy](https://pypi.org/project/pluggy)|0.002|
+|pypi|[packaging](https://pypi.org/project/packaging)|0.002|
+|pypi|[iniconfig](https://pypi.org/project/iniconfig)|0.002|
+|pypi|[scikit-learn](http://scikit-learn.org)|0.001|
+|pypi|[torchaudio](https://github.com/pytorch/audio)|0.001|
+|pypi|[torchvision](https://github.com/pytorch/vision)|0.001|
+|pypi|[tqdm](https://tqdm.github.io)|0.001|
+|pypi|[tzdata](https://pypi.org/project/tzdata)|0.001|
+|pypi|[backports.zoneinfo](https://pypi.org/project/backports.zoneinfo)|0.001|
+|pypi|[importlib-metadata](https://pypi.org/project/importlib-metadata)|0.001|
+|pypi|[rich](https://pypi.org/project/rich)|0.001|
+|pypi|[redis](https://pypi.org/project/redis)|0.001|
+|pypi|[libcst](https://pypi.org/project/libcst)|0.001|
+|pypi|[lark-parser](https://pypi.org/project/lark-parser)|0.001|
+|pypi|[dpcontracts](https://pypi.org/project/dpcontracts)|0.001|
+|pypi|[django](https://pypi.org/project/django)|0.001|
+|pypi|[click](https://pypi.org/project/click)|0.001|
+|pypi|[sortedcontainers](https://pypi.org/project/sortedcontainers)|0.001|
+|pypi|[lxml](https://pypi.org/project/lxml)|0.001|
+|pypi|[typed-ast](https://pypi.org/project/typed-ast)|0.001|
+|pypi|[mypy-extensions](https://pypi.org/project/mypy-extensions)|0.001|
+
+
+> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.
+
+
+- Generated by [CiteLang](https://github.com/vsoch/citelang)