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Automate the running of RMG's Abraham.class to estimate partition coefficient of many solvent/solute pairs at once

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rwest/SolvationPredictor

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python solvation_predict.py to run RMG Abraham estimator for many solvent/solute combinations

Reads in three files:
  adjList.txt containing RMG-style adjacency lists of all the solutes by name
  Solvent Database.csv containing Abraham's parameters for the solvents (with a header row)
  Solvent-Solute List.csv containing a list of Solvent/Solute pairs that should be estimated (with a header row)
Creates one file:
  Solvent-Solute-Solvation_by_RMG.csv containing the same Solvent/Solute pairs with an extra column of logK values (without header row)
  
Requires a working RMG including Abraham.class (which may be inside a .jar)
 which in turn needs functioning GATPFit.exe in the appropriate path (see RMG instructions)

First created by Richard West on 2009-06-23.

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Automate the running of RMG's Abraham.class to estimate partition coefficient of many solvent/solute pairs at once

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