Skip to content
@saeyslab

Saeys Lab

Data Mining and Modelling for Biomedicine, a VIB - UGent research unit

Pinned Loading

  1. nichenetr nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    R 469 117

  2. FlowSOM FlowSOM Public

    Using self-organizing maps for visualization and interpretation of cytometry data

    R 26 7

  3. multinichenetr multinichenetr Public

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    HTML 113 14

  4. PeacoQC PeacoQC Public

    Peak-based selection of high quality cytometry data

    R 14 7

  5. spotless-benchmark spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    R 26 1

  6. CytoNorm CytoNorm Public

    R library to normalize cytometry data

    R 33 6

Repositories

Showing 10 of 58 repositories
  • spotless-benchmark Public

    A repository for benchmarking spatial deconvolution and mapping tools

    saeyslab/spotless-benchmark’s past year of commit activity
    R 26 MIT 1 0 0 Updated Oct 3, 2024
  • harpy Public

    https://harpy.readthedocs.io/en/latest/

    saeyslab/harpy’s past year of commit activity
    Python 7 1 10 1 Updated Oct 2, 2024
  • CytoBright Public

    Estimate Stain Index for single stained cytometry files.

    saeyslab/CytoBright’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Sep 27, 2024
  • ViScore Public

    Single-cell dimensionality reduction evaluation and benchmarking toolkit

    saeyslab/ViScore’s past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Sep 25, 2024
  • FlowSOM_Python Public

    The complete FlowSOM package known from R, now available in Python!

    saeyslab/FlowSOM_Python’s past year of commit activity
    Python 12 GPL-3.0 3 2 2 Updated Sep 25, 2024
  • ViVAE Public

    Single-cell dimensionality reduction toolkit

    saeyslab/ViVAE’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 1 0 0 Updated Sep 24, 2024
  • polygloty Public
    saeyslab/polygloty’s past year of commit activity
    HTML 1 MIT 0 0 1 Updated Sep 24, 2024
  • nichenet_training Public
    saeyslab/nichenet_training’s past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2024
  • nichenetr Public

    NicheNet: predict active ligand-target links between interacting cells

    saeyslab/nichenetr’s past year of commit activity
    R 469 117 17 0 Updated Sep 5, 2024
  • multinichenetr Public

    MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

    saeyslab/multinichenetr’s past year of commit activity
    HTML 113 GPL-3.0 14 13 0 Updated Sep 5, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…