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Genomic Surveillance

Documentation Status

Genomic Surveillance is a collection of statistical algorithms to monitor local prevalence of viral lineages.

Quick install

Via Pypi

To install genomicsurveillance via Pypi simply type

$ pip install genomicsurveillance

into your shell.

Getting started

We provide a Google Colab notebook that explains data preparation steps and the usage of the model.

https://colab.research.google.com/drive/1bKEnykFe_gSD_VWk04LWNIsoZiQJ8RcB?usp=sharing

Credits

Harald Vöhringer, Matthew Sinnott, Theo Sanderson, Roberto Amato, Inigo Martincorena, Dominic Kwiatkowski, Jeffrey C. Barrett and Moritz Gerstung, on behalf of The COVID-19 Genomics UK (COG-UK)