A cladistic method of estimating transmission rates.
Description: transRate uses a cladistic approach for estimating transmission rates between populations that has been supported by simulations of the coalescent with migration. This novel approach, which is based on Slatkin and Madison's approach to estimating gene flow, functions with coalescent models with an island model of population structure. Transmission rate is defined as Infection Rate * Contact Probability.
Version: 1.0.0
Imports: phybase,stringr, maps, geosphere,dplyr,tibble,ape,graphics
Author: Skylar Ann Gay
https://www.youtube.com/channel/UCYhgBsH2fQhYKVYNXCQu2GQ
Gay SA (2022). transRate: Tools for Transmission Rate Estimation. R package version 1.0.0.
© Copyright 2022. Skylar Ann Gay. All rights reserved.
Permission is granted to reproduce, perform, and modify these programs and documentation files. Permission is granted to distribute or provide access to these programs provided that this copyright notice is not removed, the programs are not integrated with or called by any product or service that generates revenue, and that your distribution of these documentation files and programs are free. Any modified versions of these materials that are distributed or accessible shall indicate that they are based on these programs. Institutions of higher education are granted permission to distribute this material to their students and staff. Permission requests for any other distribution of these programs should be directed to skylar.gay@uga.edu